Misgurnus anguillicaudatus (oriental weatherfish): 129422080
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Entry
129422080 CDS
T09481
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129422080 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
manu03021
]
129422080 (polr1a)
Enzymes [BR:
manu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129422080 (polr1a)
Transcription machinery [BR:
manu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129422080 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
129422080
NCBI-ProteinID:
XP_055033751
LinkDB
All DBs
Position
18:33114537..33134993
Genome browser
AA seq
1699 aa
AA seq
DB search
MQFSKETPWRRLEGLSFGMLSSDEIRKLSVKSITNAQLLDNVGNAAANGLYDLALGPADN
KEICSTCMQDFNSCPGHFGNIDLPLPVYNPLFFDKLYLLIRGSCLSCHMLTCPRAAVHLL
LCQLKLLDVGAMKEVYELENFLNQFVEANTQPSGVQIQEALNEFITPILKANENNQQTSP
IKHVCEKKGSLINSFWRIHMIPKKCLNCKASRAHVRREHNSKLIVTHSSTNKDSEGKDDD
VPAAKRGYLTPSLAREHVIKLWEKEGFFLRHLFSGFDMSSSEKGFNSEVFFLDLLVVPPC
KYRPVNRLGDQMFTNGQTVNMQAVLKDNLIIQKLLALIAAEKTKDIEGTQTELEQSSETT
EISQIDQSFLSDIQGQTLTDKLYNIWIRLQTHVNIVFDSDMDKLMTEKFPGVRQLLEKKD
GLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVL
NGPNVHPGASMVINEDGSRTILSSTNLTQREAVAKQLLTPSTGQHKIPMKIVNRHIKNGD
VLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRA
EAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTNMTIRGCFFTRDQYTALVYRGLTDKIG
RVKLLPPALIKPVTLWTGKQVVSTLLLNVIPENCIPLNLTGKAKIPSKAWVKEPPRSVPG
YKPEVMCESQVLIRQGELLIGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFT
AYLQLYRGFTLGVEDILVKERANKQRRKIIKESVTCGSKALKAAFNLSASAAEDEARERW
QDAHLNPDQRDFNMVDLKFKEEANQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGST
VNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFF
HCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDI
PKTQFLQPRQFSFIKDNYEVIRKSKCLDEVLAKMDPQAAYNHFKAIKRWKAKHERVSPRD
GAFLLYSRKKLGKMKAETTSQTLTNGRDAATLQLLERWGDLDESNRMKYLKKSSRCPDPC
LGLHRPDICFGSVSETFDAIVESYMNQFDVKDEFQTSPDVIDTDRLKVLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKTPMMSI
PVLTSKKAMKRVKTLRKKLARVCLAEVLHKVDVTETLRMEGKKRQKSRVFKLTFHFLPPE
RYQQDKLLTPQQILNYMEQKFFRLLLEAIKKLNTKLSSLSAVVTRKATARDHDRDATGSA
GGEDDADEVAEDNRVVDDEANEGDADATDTRRKEKQEEEVDYESEEEEEEGGGGSDDEQA
DDRQEEAGSSELLEEGSGESPPPSTGDAEQIKECNQESMRINTVLQLGSAIEDYKYDTTD
GLWCELTMVLPVSKVHFDLTSVVVKQAQNSVIMETKGITRCLLNEVTTKQGSKELVLNTE
GINMQELFRYSDILNLNRLYSNEIHAMANTYGIEVAQRVIEKEIKDVFAVYGIEVDPRHL
SLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDQLSSPSACLV
VGKVVKGGTGLFDLKQPLQ
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttcaaaagaaacaccatggaggcgattagagggcttgtcgtttggcatgttg
tcctctgatgaaataaggaaactgagtgtgaaaagcatcaccaatgcccagcttttggat
aatgtgggtaatgcggcagcaaacgggttgtatgatctggctctgggtccggctgacaac
aaagagatctgctcaacctgcatgcaggactttaacagctgtcctggacactttggtaac
atagatctgcccctgcccgtctacaaccctctgttttttgataaattatatttgctcatc
cggggttcgtgcctgtcgtgccacatgttgacatgtccgagagcagccgttcatttactg
ctgtgccagctgaagctcttggacgtgggtgccatgaaggaggtttatgaacttgagaat
tttctcaatcagtttgtggaggccaacactcaaccatctggagtacaaatccaagaagct
ctgaatgagtttattactcccatcctcaaagccaatgaaaacaatcagcaaacttcacct
atcaaacatgtctgtgaaaagaaaggcagtctcatcaacagtttctggagaatacacatg
atccctaaaaaatgcctgaactgcaaagccagccgagcgcacgtgcgcagagaacataac
agtaaactgatcgtcacacattcatctacaaataaagattcagaaggaaaggacgatgat
gtgccagcggccaaacgtggatatttgactccaagtttagctcgagagcatgtcatcaaa
ctctgggagaaggaaggttttttcctaaggcatctgttttcaggatttgacatgagcagc
tcagagaagggcttcaactctgaagttttcttcttagacctgcttgttgttcctccttgc
aagtacaggcccgttaatcgtttaggagatcagatgtttaccaacggtcagactgtgaac
atgcaggcagtattgaaggataatttaatcattcaaaagttgttggcactgatcgctgct
gagaagaccaaagatattgaaggcacacagacagagctggagcagtccagtgagactaca
gagatcagtcagatagatcagtccttcttatcagacattcaaggacagactctaacagac
aagctctacaacatctggatccgtctacagacccacgtcaacattgtttttgacagcgat
atggacaaactgatgacagagaagtttcccggtgtccgtcagctcttggagaagaaagac
ggtctgttcaggaaacacatgatggggaagcgtgtggattacgccgctcgatccgtcatt
tgtcctgacatgtacatcggcaccaatgagattggaataccaatggtgtttgctaccaaa
ctgacatacccacagccggtgacaccgtggaacgtgaaggaactcaggcaggctgttctg
aacggacccaacgttcaccccggagcctctatggtcattaatgaggacggctcccgaaca
atcctcagcagtaccaatctgacccaaagagaagccgtagctaaacaactcctgacaccc
agcactggacaacacaagatccccatgaagattgttaatcgtcacatcaagaatggagac
gtgttgttgttgaaccgtcagccaactctccacagaccgtccattcaggcccattgcgct
cggatcttgccgggagagaaagtgctcaggttacattacgctaactgtaaagcctacaat
gccgactttgacggtgacgagatgaacgctcatttccctcagagtgaactgggcagagcg
gaggcttacacactagtgagcacagatcagcagtatttagtgcctaaagacgggaagccg
ttggctggtctgattcaggatcacatggtgtccggcaccaacatgactatccgtggatgt
tttttcacacgggatcagtacactgcgctggtctacagaggtctgacagacaagatcggg
cgagtgaagctccttcctcccgcactcattaaacccgtaacactctggacgggcaaacag
gttgtgtcgacccttttgctgaatgtcattcctgaaaactgcattccattgaacctgacg
ggaaaggcaaagattcccagtaaagcctgggtgaaggaacctcccagatctgttcctgga
tacaagccggaagttatgtgtgaatctcaggtgctcattcgtcagggtgagcttctgatt
ggtgtgttggataaagcgcactatggcagctctgcttacggtctggtacactgctgctac
gagctgtacggtggagaaaccagcgggaaactgctcagctgtctggcacgactctttact
gcctacctgcagctgtaccgcggtttcaccttaggcgtggaggacattttagtgaaagaa
agagccaacaaacaacgaagaaaaataattaaagaatcagtgacatgtggctccaaggct
cttaaggctgcctttaacctgtctgcgtctgctgcggaggatgaagccagggaacgctgg
caagatgctcatctcaacccagaccagagagatttcaacatggtggacctgaagttcaaa
gaggaggccaatcaagtgaacaacaacatcaacaaggtgtgcatgccgctgggtctccac
cgctcctttcctgaaaacaacctgcagcttatggtgcagtcaggagcaaaaggttcaact
gttaacaccatgcagatctcctgtttgttgggtcagatcgagctggagggccgacggcca
ccactgatgccttctgggaaatcgctgccctgttttcagccctacgaacctcagccacgc
tcgggcggattcgtcaccggcagatttctgacgggcatcaaacctcctgagttttttttc
cattgcatggctggtcgcgaaggtcttgtggacacggctgtcaagaccagtcgatctggt
tatcttcagaggtgtgtgattaaacatctggagggtctggtagtacagtatgatctgacc
gtgagagacagtgatggaagtgtggtccagtttctttacggagaggatggactggatatt
cccaagactcagtttttacagccgcgacagttcagtttcatcaaagacaactatgaggtc
atcaggaagtcaaagtgtttggatgaagttttggctaaaatggacccgcaggctgcgtat
aaccattttaaggccataaagagatggaaagccaaacatgagcgcgtttcacccagagat
ggggcgttcctgctttactcacggaagaaactgggcaagatgaaagctgaaacaacgagc
cagacattgaccaatgggagagatgcagccacattacagcttttggagcggtggggagat
ctggacgagtctaatcgtatgaagtatttaaagaaatcctcccgttgtccagacccgtgt
ttgggtcttcatcggccggacatctgctttggttcagtatccgagacgtttgacgccatt
gtcgagtcctatatgaatcaatttgatgtaaaggacgaatttcaaacatcacctgatgtc
attgacacagatagactgaaggttctcctgcagctgaagtggcagcgagctctgtgtgat
cccggggaagctgtcggtctgctggccgctcaaagcatcggagagccgtccacacaaatg
accctcaacacattccactttgctggcagaggagagatgaacgtcaccctgggtattccc
agattacgagagatcctcatgattgccagttccaacatcaaaacacccatgatgagcatt
cccgttctgacaagcaagaaagccatgaagcgtgttaagacactccggaagaagttagcc
cgggtttgtttggctgaggtgcttcacaaggtggacgtgacggaaactttacgcatggag
ggcaaaaaaaggcaaaagtcaagagtctttaaactcactttccactttctgccacctgag
agataccagcaagacaagctgctcacccctcaacagatcctcaattacatggagcaaaaa
ttctttcgtctgctgttagaagccattaagaagctcaacactaaactctcatctctcagt
gccgtggtcacacgcaaggccacggcgagagatcacgatcgagatgcgaccggctcagcg
ggcggagaggatgatgctgatgaggttgcagaagacaatcgggttgtggacgatgaggcg
aacgagggagacgctgatgcaacagataccaggaggaaagagaaacaagaagaagaggtg
gactatgagagtgaggaagaggaggaggagggcggtggcggcagtgatgatgaacaggct
gatgacagacaggaagaggcggggtcttcagagcttcttgaggaagggtccggtgaaagc
ccgccaccgagtactggtgacgctgaacagataaaagagtgtaaccaagaatcaatgcga
atcaacaccgtactacagttaggctctgccattgaggactacaaatatgacaccacagat
ggactatggtgtgagctgaccatggttcttcccgtcagtaaggtgcactttgacctcaca
tcagtggtggtaaagcaggctcaaaactctgttatcatggagaccaagggtatcacgcgc
tgtttactgaatgaagtcactaccaaacaaggtagtaaagagcttgtgctgaacacggag
ggtatcaacatgcaggagctcttcagatattctgatatcctgaacctgaatcgattatac
tccaatgagattcatgctatggccaacacatatggcattgaggtggcccaaagagtcatt
gaaaaggaaattaaagatgtgtttgctgtctatggtattgaggtcgacccgcgtcacctc
tctctagtggctgactacatgtgttttgagggggtttacaagcctcttaaccggtttggg
atccagtccaacagttctccattacagcagatgacctttgagaccagttttaagttcttg
aagcaggccacaatgctgggttcttatgatcaactgagttctccgtcagcttgtttggtt
gtagggaaagttgtcaaaggaggaacgggcctcttcgatcttaaacagccattacaataa
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integrated database retrieval system
