Massilia sp. YMA4: DPH57_15400
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Entry
DPH57_15400 CDS
T05528
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03030
DNA replication
masy03410
Base excision repair
masy03420
Nucleotide excision repair
masy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPH57_15400
03410 Base excision repair
DPH57_15400
03420 Nucleotide excision repair
DPH57_15400
03440 Homologous recombination
DPH57_15400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
masy03032
]
DPH57_15400
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_15400
Enzymes [BR:
masy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DPH57_15400
DNA replication proteins [BR:
masy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DPH57_15400
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DPH57_15400
NER (nucleotide excision repair)
GGR (global genome repair) factors
DPH57_15400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AXA92408
UniProt:
A0A7U5XZT8
LinkDB
All DBs
Position
complement(3621267..3624017)
Genome browser
AA seq
916 aa
AA seq
DB search
MQKTLLLVDGSSYLYRAFHALPDLRSPDGHPTGAMHGMVNMLRRLRADYPAAYIACVFDA
KGKTFRDDLYPEYKATRASMPADLSLQIEPIHEAVRAMGWPILMVDGVEADDVIGTLAVT
AEKNGMDVIISTGDKDLAQLVTPHVTLINTMSNEKLDEAGVLAKFGVPPNRIIDYLTLIG
DTVDNVPGVAKCGPKTAVKWLTQYDSLDGVIANADKITGAVGANLKAALEWLPKGRELIT
VKTDCDLSGHMMSISESLVAKDEDHESLLSFFTKYGFKTLLRELGAMTPSPKVPGQTTPA
APEGATGDMFAQPPANVKYDTVLTEAQLDEWIARITQAELVSLDTETTSLEPMTAQLVGI
SLATEPGLACYIPVAHRYAGVPEQLPRELVLEKLKPWLEDASKAKLGQNLKYDAHIFANH
GVTLRGVVHDTLLQSYVFESHRTHDMDSLAMRHLNHKTIPFEDVCGKGANMICFDQVELQ
RATDYAAEDADITLRLHLAMHGHVAGDEGLTAIYNKIELPTAVVLQKIERNGVLIDAGLL
ATQSEELGARIVELEQKAYELAEQPFNLGSPKQIGEIFFNKLKLPVVKKTPSGAPSTDEE
VLQKLAEDYPLPKILLEYRGMAKLKSTYTDKLPKMINPQTGRVHTNYAQAVAVTGRLASN
DPNLQNIPIRTAEGRRIREAFVAPAGSHIVSADYSQIELRIMAHISGDEAMLRAFAEGVD
IHRATAAEIFGVPPDEVNSEQRRYAKVINFGLIYGMSAFGLAANLGIDRAAAQNYIDRYF
ARFSGVKQYMDETRLEAKANGYVKTVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTA
ADLIKLAMIAVQDWLEKENLKSRMIMQVHDELVLEVPDDELQLVRETLPKLMAGVAQLKV
PLVAEVGVGRNWEEAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaccctgctgttagtcgacggttccagttacctctaccgtgccttccacgcg
ctgcccgacctgcgcagcccggatggccacccgaccggcgccatgcacggcatggtcaac
atgctgcgccgcctgcgcgccgactacccggccgcctatatcgcctgcgtcttcgatgcc
aagggcaagaccttccgcgacgatctttatccggaatacaaggcgacgcgcgcctcgatg
ccggccgacctgtcgctgcagatcgagccgatccacgaagccgtgcgcgcgatgggctgg
ccgatcctgatggtcgacggcgtggaggcggacgacgtgatcggcacgctggccgtgacg
gccgagaagaacggcatggacgtcatcatctcgacgggcgacaaggacctggcccagctg
gtcacgccgcacgtcacgctgatcaatacgatgagcaacgaaaagctggacgaggcgggt
gtgctggccaagttcggcgtgccgcccaaccgcatcatcgactatctgaccctgatcggc
gacacggtggacaacgtgcccggcgtggcgaagtgcgggccgaagacggccgtcaagtgg
ctgacgcaatacgacagcctcgatggcgtgatcgccaacgcggacaagatcacgggcgcc
gtcggcgccaacctgaaggcggcgctggagtggctgcccaagggccgcgagctgatcacc
gtgaagaccgattgcgatctgtccggccacatgatgtcgatcagcgaatcgctggtggcg
aaggacgaggaccacgagtcgctgctgagctttttcaccaagtacggcttcaagacgctg
ctgcgcgagctgggcgcgatgacgccctcgcccaaggtgccgggccagaccacgccggcg
gcgccggaaggcgcgaccggcgacatgttcgcccagccgcccgccaacgtgaaatacgac
acggtgctgaccgaggcccagctggacgaatggatcgcccgcatcacgcaagccgaactg
gtatcgctggacacggaaaccacgtcgctggagccgatgacggcgcaactggtcggcatc
tcgctggcgacggagccgggcctggcctgctatatcccggtggcgcaccgctacgcgggc
gtgccggaacagctgccccgcgagctggtgctggaaaagctgaaaccctggctggaagac
gccagcaaggccaagctgggccagaacctgaaatacgacgcgcacatcttcgccaaccac
ggcgtgaccctgcgcggtgtggtgcacgacacgctgctgcaatcgtacgtgttcgaatcg
caccgcacgcacgacatggacagcctggcgatgcgccacctgaaccacaagaccatcccg
ttcgaggacgtgtgcggcaagggcgccaacatgatctgcttcgaccaggtcgaactgcag
cgcgccaccgactacgcggccgaggatgcggacatcaccttgcgcctgcacttggcgatg
cacggccacgtggccggcgacgagggcctgacggcgatctacaacaagatcgagctgccg
acggccgtggtgctgcaaaagatcgagcgcaacggcgtattgatcgacgccggcctgctg
gccacgcagtcggaagagctgggcgcgcgcatcgtcgaactggaacagaaggcgtatgag
ctggccgagcagccgttcaacctgggttcgcccaagcagatcggcgagatcttcttcaac
aagctgaaactgccggtggtgaagaagacgccgagcggcgcgccgtcgacggacgaggaa
gtgctgcagaagctggccgaggactatccgctgccgaagatcctgctggaataccgtggc
atggccaagctgaagtccacctacacggacaagctgccgaagatgatcaatccgcagacg
ggccgggtgcacaccaactacgcccaagcggtggcggtgacggggcggctggcgtcgaac
gacccgaacctgcagaacatcccgatccgcacggccgagggccgccgcatccgcgaggcc
ttcgtggcgccggcaggcagccacatcgtctcggccgactattcgcagatcgagttgcgc
atcatggcgcatatttccggcgacgaggcgatgctgcgcgcgttcgcggaaggcgtcgac
atccaccgcgccaccgcggccgagatcttcggcgtgcctccggacgaagtgaacagcgag
cagcgccgctacgccaaggtcatcaacttcggcctgatctacggcatgagcgcgttcggc
ctggccgccaacctgggcatcgaccgcgccgccgcgcagaactacatcgaccgttacttc
gcgcgcttctccggcgtcaagcagtacatggacgaaacgcgcctggaagcgaaggcgaac
ggctacgtcaagacggtgttcggccgccgcctgtggctccccgagatcaactccccgaac
ggtccgcgccgccaggccgcggagcgtgccgcgatcaacgcgccgatgcagggcacggcg
gcggacctgatcaagctggccatgatcgccgtgcaggactggctggaaaaggaaaacctg
aagtcgcgcatgatcatgcaggtgcacgacgaactggttctggaagtgccggacgacgag
ctgcagctggtgcgggagacgctgccgaagctgatggccggcgtggcgcagttgaaggtg
ccgctggtcgccgaagtcggcgtggggcggaactgggaggaggcgcactga
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