Mus caroli (Ryukyu mouse): 110284204
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Entry
110284204 CDS
T05910
Symbol
Cacna1h
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H isoform X2
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal04010
MAPK signaling pathway
mcal04020
Calcium signaling pathway
mcal04713
Circadian entrainment
mcal04925
Aldosterone synthesis and secretion
mcal04927
Cortisol synthesis and secretion
mcal04929
GnRH secretion
mcal04934
Cushing syndrome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110284204 (Cacna1h)
04020 Calcium signaling pathway
110284204 (Cacna1h)
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
110284204 (Cacna1h)
04925 Aldosterone synthesis and secretion
110284204 (Cacna1h)
04927 Cortisol synthesis and secretion
110284204 (Cacna1h)
09159 Environmental adaptation
04713 Circadian entrainment
110284204 (Cacna1h)
09160 Human Diseases
09167 Endocrine and metabolic disease
04934 Cushing syndrome
110284204 (Cacna1h)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mcal04040
]
110284204 (Cacna1h)
Ion channels [BR:
mcal04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110284204 (Cacna1h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
110284204
NCBI-ProteinID:
XP_021005554
Ensembl:
MGP_CAROLIEiJ_G0021237
UniProt:
A0A6P5NX96
LinkDB
All DBs
Position
17:complement(21207151..21266611)
Genome browser
AA seq
2359 aa
AA seq
DB search
MTEGTLAADEVRVPLGASPSAPAAPVRASPASPGAPGREEQRGSGSSVLAPESPGTECGA
DLGADEEQPVPYPALAATVFFCLGQTTRPRSWCLRLVCNPWFEHISMLVIMLNCVTLGMF
RPCEDVECRSERCSILEAFDDFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVM
AGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFV
FFIFGIVGVQLWAGLLRNRCFLDSAFVRNNNLTFLRPYYQTEEGEENPFICSSRRDNGMQ
KCSHIPSRRELRVQCTLGWEAYGQPQAEDGGAGRNACINWNQYYNVCRSGEFNPHNGAIN
FDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIAT
QFSETKQRENQLMREQRARYLSNDSTLASFSEPGSCYEELLKYVGHIFRKVKRRSLRLYA
RWQSRWRKKVDPSSTLHGQGPRRRPRRAGRRTASVHHLVYHHHHHHHHHYHFSHGGPRRP
SPEPGAGDTRLVRACVPPSPPSPGHGPPDSESVHSIYHADCHVEGPQERARVAHTIATAA
SLKLASGLGTMNYPTILPSGAVNSKGGTSSRPKGLRGAGTPGATAHSPLSLGSPSPYEKI
QHVVGEQGLGRASSHLSGLSVPCPLPSPQAGTLTCELKSCPYCASALEDPEFEFSGSESG
DSDAHGVYEFTQDVRHGDCRDPVQQPHEGGTPGHGNERWRPPLRTASQPGGLVRLWASFS
SKLRRIVDSKYFNRGIMAAILVNTLSMGVEYHEQPDELTNALEISNIVFTSMFALEMLLK
LLACGPLGYIRNPYNIFDGIVVVISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRR
QLVVLMRTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDSGDTVPDRKNFDSLLWA
IVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGD
ATRSDTDEDKTSTHLEEDFDKLRDVRATEMKMYSLAVTPNGHLEGRGSLPPPLITHTAAT
PMPTPKSSPHLDMAHALLDSRRSSSSSVDPQLGDQKSLASLRSSPCAPWGPNSAGSSRRS
SWNSLGRAPSLKRRSQCGERESLLSGEGKGSTDDEAEDSRPSSGTHPGASPGPRATPLRR
AESLGHRSTLDLCPPRPATLLPTKFRDFNGQMVALPSEFFLRIDSHKEDIAEFDDDIEDS
CCFRLHKVLEPYAPQWCSSRESWALYLFPPQNRLRVSCQKVIAHKMFDHVVLVFIFLNCI
TIALERPDIDPGSTERAFLSVSNYIFTAIFVVEMMVKVVALGLLWGEHAYLQSSWNVLDG
LLVLVSLVDIIVAVASAGGAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRP
IGNIVLICCAFFIIFGILGVQLFKGKFYYCEGTDTRNITTKAECHAAHYRWVRRKYNFDN
LGQALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPVQNHNPWMLLYFISFLLIVSFFVLNM
FVGVVVENFHKCRQHQEAEEARRREEKRLRRLERRRRKAQRRPYYADYSHTRRSIHSLCT
SHYLDLFITFIICLNVITMSMEHYNQPKSLDEALKYCNYVFTIVFVFEAALKLVAFGFRR
FFKDRWNQLDLAIVLLSIMGIALEEIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGM
RALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECSEDNPCEGLSRHATFTNFG
MAFLTLFRVSTGDNWNGIMKDTLRECTREDKHCLSYLPALSPVYFVTFVLVAQFVLVNVV
VAVLMKHLEESNKEAREDAEMDAEIELEIAQGSTAQPPSTAQESQGTQPDTPNLLVVRKV
SVSRMLSLPNDSYMFRPVAPAVAPHSHPLQEVEMETYTGPVTSAHSPPLEPRASFQVPSA
ASSPARVSDPLRALSPRDTPRSLSLSRILCRQEAMHAESLEGQIDDAGEDGIPDYTEPAE
NSSMSQAPLGTLRSPPCSPRPASVRTRKHTFGQRCISSRPPTLGGDDAEAADPADEEVSH
ITSSAHPWPATEPHSPEASPTASPAKGTVGSGRDPHRFCSVDAQSFLDKPGRPDAQRWSS
VELDNGDGHLESGEVRARASELEPALGARRKKKMSPPCISIDPPTEDEGSSRPPAAEGGH
TTLRRRTPSCEAALHRDCPESTEGPGTGGDPVAKGERWGQASCRAEHLTVPNFAFEPLDM
GGPGGDCFLDSDQSVTPEPRVSSLGPVVPLILETELCMPSGDPPEKEQGLYLTVPQTPLK
KPGSPPATPAPDDSGDEPV
NT seq
7080 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagggcacgctggcagcggacgaggtccgggtgcccctgggcgcttcgccttcg
gctcctgcagcgccggtgagggcttccccagcgagccctggggcgccagggcgcgaggag
cagcgaggatccgggtccagcgtgttggctcccgagagcccagggaccgagtgtggtgcg
gacctgggcgccgacgaggaacaacccgtcccataccccgctctggctgccacagtcttc
ttctgcctcgggcaaaccacgcggccgcgcagctggtgcctccgactggtttgtaacccg
tggttcgagcacattagcatgctggtcatcatgctgaactgtgtgaccctgggcatgttc
cggccctgtgaggatgttgagtgccgttcagaacgttgcagcatcttggaggcctttgat
gacttcatctttgccttctttgctgtggagatggttatcaagatggtggctttgggactg
tttggccagaaatgctacctgggtgacacctggaacaggctggacttcttcattgtcatg
gcaggcatgatggagtactctctggacggacacaacgtgagcctctctgccatccgaacg
gtgcgtgtgctgcggcccctccgcgccatcaaccgggtccccagcatgcgaatcctggtc
actctgctgctggacacactgcccatgcttgggaacgtccttctcctctgcttcttcgtc
ttcttcatcttcggcatcgttggggtccagctctgggctggcctgctgcggaaccgctgc
ttcctggacagcgccttcgtcaggaacaacaacctgaccttcttgcggccatactaccag
acagaggagggcgaggagaacccgttcatctgttcctcacgccgcgacaatggcatgcag
aaatgctcgcacatccccagccgccgtgagcttcgagtgcagtgcacactcggctgggag
gcctatgggcagccacaggctgaggatgggggtgccggtcgaaatgcctgcatcaactgg
aaccagtactacaatgtgtgccgctcaggggaattcaaccctcacaatggtgccatcaac
tttgacaacattggctatgcttggatcgccatcttccaggtcatcacactggagggctgg
gtggacatcatgtactacgtcatggatgcccactcgttctacaacttcatctacttcatc
ctcctcatcattgtgggctccttcttcatgatcaacctgtgcctggtggtgatagccaca
cagttctcagagacaaagcagagggaaaaccagctgatgcgtgaacagcgggcccgctat
ctgtccaacgacagcactctggccagcttctcggagcctggcagctgctatgaggagctc
ctcaagtacgtgggccacatcttccgaaaggttaaacgccgtagcctgcgcctttatgcc
cgctggcagagccgttggcgtaagaaggtagatcccagcagcaccctgcatggccaaggc
cccaggcggcggccacggcgcgcaggcaggcgcacagcttctgtgcaccatctggtctac
caccaccaccaccaccatcaccaccattaccacttcagccatggtggcccacgcaggcct
agcccagagccaggtgctggtgacaccaggttggttagggcctgtgtgccaccctcgcca
ccatccccaggccatgggccaccggactctgagtctgtgcacagtatctaccatgctgac
tgccacgtggaggggccacaggaaagagcccgtgtggcgcacaccatagccactgctgcc
agcctcaagctggcctcgggcttgggcaccatgaactaccccaccatcctaccttcagga
gcagtcaacagcaaaggtggtaccagctcgcgacccaaggggcttcggggtgctggcacc
ccaggggctacagcacacagccctctgagcctggggagccccagcccctatgagaagatc
cagcacgtggttggggaacaaggactaggccgagcctctagtcacctgtcaggcctgagt
gtgccttgccccctgcccagcccccaggctggcacgctgacctgtgagctgaagagctgc
ccatattgtgccagcgccctggaggaccccgagtttgagttcagtggctcagagagtggg
gactcggatgcccatggagtctatgagtttacacaggacgtacggcatggggattgccgg
gatcctgtgcagcagccccatgaagggggcacgccgggccatggcaacgagcggtggcgg
ccgccgctgcggacagcctcacagccaggagggttagtccgcctctgggcttcctttagt
agcaagctgcgtcgcattgtagacagcaagtacttcaaccgaggcatcatggcggccatc
ctcgtcaacactctgagcatgggtgttgagtatcatgagcagcctgatgagctgactaac
gcactggagataagcaacatcgtgttcaccagcatgtttgccttggagatgctactgaag
ttgctggcctgtggcccgctgggctacattcggaacccctacaacatcttcgatggcatc
gttgttgtcataagcgtctgggagatcgtggggcaggcagatggtggcctgtcggtgctc
cgtacattccggctgctgcgggtgctgaagctggtgcgcttcctgccagccctgcggcgg
cagctggtggtgctcatgaggaccatggacaacgtggccaccttctgcatgctgctaatg
ctcttcatcttcatcttcagcatcctgggcatgcacctgtttggctgtaagttcagcctg
aagacagactctggagacaccgtccctgacaggaagaacttcgactctctactgtgggct
atcgtcactgtgtttcagatcttgacacaggaagactggaacgtggttctttacaacggc
atggcttccacctcgtcctgggctgccctttactttgtggccctcatgacctttgggaac
tatgtgctcttcaacctgctggtggccatcctggtggaaggcttccaggcagagggcgat
gccaccagatctgacaccgatgaggataagacatctacccacctagaggaagatttcgat
aagctcagagacgttcgagccacagagatgaagatgtactcactggccgtgacccctaac
gggcacctagagggccgaggcagtctgccaccgcctctcatcacgcacacagcggctacg
cctatgcctacccccaagagctccccgcatctggacatggcccatgctcttctggactca
cggcgcagcagcagcagctctgtggacccccaacttggggaccagaagtctctggccagc
ctgcgcagctccccttgtgccccatggggccccaacagtgcaggaagcagccggcgctcc
agctggaacagcctgggccgcgcacccagcctcaaacgccgcagccagtgtggggagcgc
gagtccctgctctctggcgaggggaagggcagcacggatgatgaggccgaggacagcaga
ccaagctcggggacccacccaggagcttcacccgggccccgggccacacccctgcggcgt
gctgagtcgttgggccaccgcagcacgctggacctgtgtcccccacggcctgccaccctc
ctgcccaccaagttccgtgacttcaacgggcagatggtggccctgcccagcgagttcttc
ctgcgcatcgacagccacaaggaggacatagcagagtttgatgatgacatagaggatagc
tgctgtttccgcctgcacaaagtgctggaaccctacgcaccccagtggtgcagcagccgg
gagtcctgggccctatatctcttcccgccgcagaacaggctacgcgtctcctgccagaaa
gtcatcgcacacaagatgtttgaccacgtggtccttgtcttcatcttcctcaactgtatc
accattgccctggagaggccagacatcgacccgggcagcactgagcgggcctttctcagc
gtctccaactacatcttcacagccatcttcgtggtggagatgatggtgaaggtggtagcc
ctggggctgctgtggggtgagcatgcctacctgcagagcagctggaacgtgttggacggg
ctgcttgtcctggtgtccctagttgacatcatcgtggccgtggcctccgctggtggtgcc
aagatcctaggcgtcctgcgcgtgctgcgcctgctgcggaccctgaggcctctgagggtc
atcagccgagctccaggcctcaagctggtcgtggagactctgatatcatcgctcaggccc
atcgggaacatcgtcctcatctgctgcgccttcttcattatctttggcatcctcggggtg
cagcttttcaagggcaaattctactactgcgagggtacagataccaggaatatcaccacc
aaggccgagtgccatgccgcccactaccgctgggtgaggcgcaaatacaactttgacaac
ctgggtcaggcgctgatgtctctgttcgtgctgtcatccaaggatggctgggtaaacatc
atgtacgacgggctggatgccgtgggcatcgaccagcagcctgtgcagaaccacaacccc
tggatgctgctgtacttcatctccttcctgctcatcgtcagcttcttcgtgctcaacatg
tttgtgggcgtggtcgtggagaacttccacaagtgcaggcagcaccaggaggccgaggag
gcgcggcggcgcgaggagaaacggctgcggcgcctggagaggaggcgcaggaaggcccag
cgccggccctactacgcagattattcacacacgcgccgctccatccattcgctgtgcacc
agccactacctggacctcttcatcaccttcatcatctgcctcaatgtcatcaccatgtcc
atggagcactacaaccagcccaagtctctggacgaggccctcaagtactgcaactacgtc
tttaccatcgtcttcgtctttgaggccgcactgaagctggtggccttcggattccggagg
ttcttcaaggacaggtggaaccagctggacttggccatcgtcctcctgtccatcatgggc
attgcgctggaggagattgagatgaatgctgccctccccatcaaccccaccatcatccgc
atcatgcgcgtgcttcgcatcgcccgtgtgctgaagctactgaagatggccacaggcatg
cgcgccctgctcgatactgtggtccaagctctgcctcaggtagggaaccttggtcttctt
ttcatgctcctgttttttatctatgctgccctgggagtggagctgtttgggaggctagaa
tgcagcgaggataatccctgtgagggcctgagcagacacgccaccttcaccaactttggc
atggccttcctcacgttgttccgagtgtccactggggacaactggaatgggatcatgaag
gatactctccgtgaatgtacccgtgaagacaagcactgcctcagctacctgcccgcgctc
tcccccgtctacttcgtcaccttcgtgctggtcgcccagttcgtgctggtcaacgtggtg
gtggccgtgctcatgaagcacctggaggagagcaacaaggaggcccgggaggatgcggag
atggatgccgagatcgagctggagattgcacaggggtccacagcccagcccccgtccaca
gcacaggaaagccaaggcacccagccagacaccccgaacctcctggtcgtgcgcaaagta
tctgtgtccaggatgctctcgctacccaatgacagctacatgttccggccggtggctcct
gcggttgccccgcattcccacccactgcaggaagtggagatggagacctacacaggcccg
gtcacctctgctcactcgccacccctggagcctcgcgcctccttccaggtcccatcagct
gcgtcctccccagccagggtcagcgacccccttcgtgccctctcaccccgggatacaccc
cgctctctgagcctctcacggatactctgcagacaggaggcaatgcacgcagagtccctg
gaagggcagatagatgacgctggagaagacggcatcccagactacacggagcctgctgaa
aatagctccatgagccaggcacctctgggtaccctgcggtcccctccgtgctccccacgg
cctgccagtgtccgtacccgcaagcacacttttgggcagcgctgcatctccagccgccct
cccaccctgggaggagatgatgctgaagcagcagacccagccgatgaggaggtcagccac
atcaccagctcagcccacccctggccagctacagagccccacagcccagaggcctccccg
acagcctctcctgcaaaaggcacagtgggcagtgggcgggacccacacaggttctgcagt
gtagatgctcagagcttcctggacaaaccaggtcggccagatgcacagcggtggtcctcg
gtggaactggataatggggatggccacctggagtctggggaagtgagggcccgggcctcg
gagctagaaccagctcttggggctcggaggaagaagaagatgagccctccctgcatctcc
attgacccccccactgaggatgagggctcctcccgcccccctgcagccgaaggaggccac
actaccctgaggcgccgaaccccgtcctgtgaggctgccctccatagggactgcccagag
tctacagagggcccaggcactggaggggaccctgtagccaagggtgagcgctggggccag
gcctcttgccgggcagagcatctgactgtccccaactttgcctttgagcctctggacatg
gggggacctggtggagactgtttcttggacagtgaccaaagtgtgaccccagaacccaga
gtttcctctttggggcctgtagtgcctctaatactagaaactgaactttgtatgccctct
ggcgaccccccagagaaggagcaaggactgtacctcactgtgccccagacccccttgaag
aaaccagggtctcccccagccactcctgccccagatgacagtggagatgagcctgtgtag
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integrated database retrieval system
