Mugil cephalus (flathead mullet): 125008355
Help
Entry
125008355 CDS
T08342
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125008355 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcep03021
]
125008355 (polr1a)
Enzymes [BR:
mcep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125008355 (polr1a)
Transcription machinery [BR:
mcep03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125008355 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
HMG_box_2
CDC45
Nop14
Motif
Other DBs
NCBI-GeneID:
125008355
NCBI-ProteinID:
XP_047441521
EnsemblRapid:
ENSMGCG00000000796
LinkDB
All DBs
Position
5:21769129..21795431
Genome browser
AA seq
1690 aa
AA seq
DB search
MLFGKEVPWRRLEGMSFGMYSAEEIRKLSVKTITNARFLDAVGNVATNSLYDLALGPADS
KEVCSTCSQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLTCHTLTCPRAAIHLL
LNQLKLVDHGAMQEVCQIEQVLSQHLEENPKATGDEIENVLREFTNAVVGVNTDGSANPK
PIKHLVEMKSSLINDFWKIHMKGRKCPYCRSGKSTVRREHNSKMIVTMPAGAKNLSQTDE
DLMAGRRVFLTASTAREHINQLWEKEGFFLKCLFSGLEESVASKDGENGFYPDLFFLELL
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDCGSIRKLLALIAGEAGEKTTEEAEAPEQ
ADQTFLSAIPGGTLTDKLYNMWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKKDGLFR
KHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPN
VHPGASMVINEDGRKTILSPTNLAQREAVAKQLLTPCSGPHKMPMKIVNRHIKNGDVLLL
NRQPTLHRPSIQAHSARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYT
LVSTHQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTKDQYTELVYRGLTDKLGRVKL
LPPAIFKPQPLWTGKQVVSTLLLNVIPENAVPLNLVGKSKIPSKAWIQDPPRAAPGYFPD
KMCDSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQ
LYRGFTLGVEDILVKPGANMRRKKIIQESLKIGTKALQAAFNLPSNVDQAEARSRWQDAH
LNPDQRDFSMADHKFKEVANQVNNDINKVCMPLGLHTSFPDNNLQLMVQSGAKGSTVNTM
QISCLLGQIELEGRRPPLMPSGKFLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMA
GREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQ
FLQPRQFSFIEDNYEVIKRSQGLDDVLARLDPQTASRHFAAIQRWKAKREVACPRTGAFL
LFSQKKLAKLKQSEPERGTEILKELVQQWHSLDGAGRSKYSKKASRCPEPSLGLFRPDVC
FGSVSENFHGITEKYLEGRGSESEDGVDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQSIG
EPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSIPVLNSKKALKKAKL
LRKKLARVCLAEVLQKVDVLETLRIENHLKLRAFKVTFHFLPAARYCDDNLLSPTQILNY
METRFFRLLLDGIKKRTAKLASIAVETRKATPRDKDNDGDGAVDTAGLDDAEGEEEREIV
DGLADEGDADASDAKRKDKQEEEVDYDSEDEDGGDDAEEKEDQEEVEDNEKNEDMDEVKE
SQSEVEGARVEKKRKKRGKSPAGEDTSFQMRVNAVLASNSAIESYCYDRKHGLWCEINLV
LPVSKVHFDLTSVLSSLAQNAVIMETTGLTRCLLSEATTKKGEKETVLNTEGINMHEMFK
YSDILDINRLYSNEVHAMAKTYGIEVALKVIEKEIKDVFGVYGIEVDPRHLSLVADYMCF
EGVYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKGGT
GLFELKQPLQ
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttggaaaagaagtgccatggcggcgcctggagggcatgtcgtttggcatgtac
tccgccgaagagataaggaagttgagtgtgaagaccatcaccaatgccaggttccttgat
gccgttggaaatgtggccactaatagcttgtatgatctggccctgggaccagcagactcc
aaagaggtgtgttcaacctgctctcaggatttcaacaactgcccgggacacctcgggcac
gtagagttgcctctacctgtgtacaacccactgttctttgataaactttacctgttgatc
cgtggttcgtgtctgacgtgtcacacgttaacgtgtccccgagctgccatccacctgctg
ctgaaccagctcaagttagtggaccacggagccatgcaggaggtctgtcagatagaacaa
gtcctcagccagcatctggaggagaatcccaaagccacgggcgacgagattgagaacgtg
ctgagggagtttacaaacgcagtggttggagtgaacactgatggttcagcaaaccccaaa
ccgatcaaacatctggttgaaatgaagagcagtctgatcaatgacttctggaagatccac
atgaaaggcagaaagtgtccttactgcaggagtggcaaatcaacagtacgtcgtgaacac
aacagtaagatgatcgtcacgatgccggctggggcgaagaacctcagccaaacggatgag
gatctgatggctggaaggagagtcttcctcaccgcgagtacagctagagagcacatcaac
caactctgggagaaagaaggttttttcctgaagtgtctgttctctgggctggaggagagc
gtggcgtcaaaggatggagagaacggtttctatccagacctcttcttcctggagctgctg
gtggtcccaccgtgcaggtatcgtccaatcaatcgactgggtgaccagatgttcaccaac
gggcagacggtcaacatgcaggctgtcatgaaggactgcgggagcataagaaagcttctg
gctctgatagcgggggaagcgggggagaaaacgacagaggaggcagaggctccagaacag
gcggaccagacttttctgtctgcgatcccgggagggaccttgacggataaactctacaac
atgtggatccgtctgcagagccacgtaaacatcgtgttcgacagtgacatggacaaactg
atgacagagaaataccctggaatcagacagatcctggagaagaaggacgggttgtttcgg
aaacacatgatgggaaaacgtgtggactatgcggcacgatctgtcatctgcccagacatg
tacataggaaccaacgagatcgggatacctatggtctttgccaccaagctgacctacccc
cagccagtcaccccgtggaacgtgaaggagctccgccaggccgtcctcaacggccccaac
gtccaccccggggcgtccatggtgatcaacgaggacggcaggaaaaccatcctgtcgccg
accaacctcgcgcagagggaggcggttgccaagcaactgctgacgccctgttcaggtcct
cataagatgcccatgaagatagttaatcgtcacataaagaatggagacgttctgttactc
aacagacagccaactctgcacagaccctccatacaagcccactctgcacgcatcttacca
ggagagaaggtgttgaggctccattatgccaactgcaaggcgtacaacgctgactttgat
ggggacgaaatgaacgctcacttccctcagagtgagctgggcagagcagaggcctacaca
ttagtcagcacccaccagcagtacctcgtccccaaggatggtaaacctttagccggtctg
atccaggaccacatggtgtcaggaacgaggatgacgatacgaggctgtttcttcaccaaa
gaccagtacacggagctggtgtacaggggactgaccgacaaactgggcagagtcaagcta
ctgccgccagccatattcaaaccccagccgctctggacgggaaagcaggtggtctccact
cttctgctgaatgttatcccagagaacgctgtacctctcaacctggttggcaaatcaaaa
atccccagcaaggcgtggatacaagacccaccacgagctgctccgggatattttcctgat
aagatgtgtgactcacaggtggtgatccgtcagggcgagctcttagtcggggtcctggac
aaagctcactacggctcctcggcctatggtctggtccactgctgctacgagctgtacgga
ggcgagaccagcggcaaactgctcagctgcctggctcgactcttcacggcgtacctccag
ctgtacagaggcttcacgttgggtgtggaggacatcctggtgaaacccggcgccaacatg
cggaggaaaaaaatcatccaagagtcactgaagatcggcaccaaagccctccaggcagcg
ttcaacctgccctccaatgttgaccaagctgaggctcgcagtcgttggcaggacgctcac
ctcaacccagaccagagggacttcagcatggccgaccacaagttcaaggaagtggccaac
caagtgaacaacgacattaacaaggtgtgtatgccactcggactgcacacctcgtttcca
gacaacaacctccagctgatggtccagtcaggagctaagggatctactgtgaacacaatg
cagatctcatgtctgctcgggcagattgagctggagggacgtaggcctccgctgatgcct
tctgggaaattcttgccgtgcttccagccgtacgacccagcgcctggagccgggggcttc
gtttctggaagattcctcaccggcatcaaaccacaggagtttttctttcactgtatggct
ggcagagagggactggtcgacacagctgtgaaaacctctcgatcaggatatctgcagaga
tgtatcataaagcatctagagggcttggtggtgcagtatgatctgacggtgagggacagc
gatggctctgtggtccagttcctgtacggtgaagacggactggacatcccaaagactcag
ttcctgcagccgagacagttctccttcatagaagacaattatgaggtcatcaagaggtcc
cagggtcttgacgacgttttggcgcgtttggaccctcagaccgccagtcgacactttgca
gccatccagcgctggaaggcgaagagagaggtggcatgcccacgcacaggagccttcttg
ctgttttctcagaagaagttggctaaactaaaacagtctgagccagaaagaggaaccgaa
atactgaaagagctcgtccagcagtggcactccctggacggagccggcagatcaaaatac
agcaagaaggcctcgcgctgtcccgagccctcgctgggcttgtttaggccggatgtctgc
tttggatctgtgtcagaaaactttcacggcatcacagagaaatacctggagggccgaggc
agtgagagtgaagacggcgtggacacacacagccttcgccagctgctgcattataagtgg
cagcgttcactgtgtgatcccggtgaggcggtgggtctgctggccgctcagtccattggc
gagccctccacccagatgaccctcaacaccttccactttgccggcagaggagagatgaac
gtaactttgggaatacctcgactgagggaaatcctgatggtggccagctccaacattaaa
acccccatgatgagcatccccgtgctgaacagcaagaaggccttgaagaaagccaagctg
cttcgtaaaaaactcgccagggtgtgtctggctgaggtgctgcagaaggtggatgtcttg
gagacgctacggattgaaaatcacctaaagctgcgggcgttcaaagtcacctttcacttc
ctgcctgccgcccgctactgtgatgataatctgttgtcacccactcagattctaaactac
atggaaactaggtttttccgtctcctcctcgacggcattaagaaacgcaccgccaagctg
gcctccatcgccgtggagacgcggaaggccacccccagagacaaggacaacgatggggat
ggagcagtggacacagcagggttggacgacgcggagggagaggaggagagggagatcgtc
gatggcctggcagacgaaggagacgcagacgcctcggatgccaagcgaaaagacaaacag
gaggaggaggtcgactatgacagcgaggatgaggacggaggcgatgatgcagaggaaaaa
gaagatcaggaggaggtggaggacaacgagaagaacgaagacatggacgaggtgaaggag
tctcagtccgaggttgagggagcgagagtggagaaaaagaggaagaaacgaggaaagagt
ccggcgggagaggacacctcgtttcagatgagagtgaacgctgttctggcgtcaaactcg
gcgatcgagagctactgctacgatcgcaaacatggactgtggtgcgagatcaatctggtc
ttgccagtgagcaaggtgcatttcgacctgacctcagtcctgtcgtcactggcccagaac
gcggtcatcatggaaaccacaggcctgacacgctgcctgctgagtgaagccacgacgaaa
aaaggagaaaaagaaaccgttctcaacactgagggcatcaacatgcatgaaatgttcaag
tacagtgatattttggacatcaacaggctctactctaatgaggtccatgccatggccaag
acctatgggatagaggtggctctgaaggtcatagagaaggagatcaaagatgtcttcggc
gtctatggtatcgaggttgaccccagacatctgtctctggtagcggactacatgtgtttc
gaaggtgtatataagccactgaaccggcacgccatcaggtccaactcctctcctctgcag
cagatgaccttcgagaccagctataaattcctcaaacaggctaccatgctggggtcacac
gatcaactggtttccccctcagcctgcctggtggtggggaaggtggtcaaaggtggaacg
ggactatttgaactaaaacaacctctgcagtag
DBGET
integrated database retrieval system
