Mugil cephalus (flathead mullet): 125008428
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Entry
125008428 CDS
T08342
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125008428 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcep03019
]
125008428 (clp1)
Enzymes [BR:
mcep01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125008428 (clp1)
Messenger RNA biogenesis [BR:
mcep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125008428 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
TniB
AAA_18
Motif
Other DBs
NCBI-GeneID:
125008428
NCBI-ProteinID:
XP_047441614
EnsemblRapid:
ENSMGCG00000008709
LinkDB
All DBs
Position
5:complement(11410020..11413271)
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AA seq
441 aa
AA seq
DB search
MATEVVEKTSEDAPATGKVSTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASTFQVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVSYYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSVEDGDEGARKGIVESPVCGFIVVTYVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaggttgtggaaaagacaagtgaagatgctccagcaactggaaaggtcagc
accaggttcgacctggaaaaggagactgagcttcggtttgaggtggaggcaggggaggca
gcagagcaggttgagttggagcttctcacgggaatggcagaggtgtttggatcggagctg
aaccgcaacaagaagtacacatttggaccgggctccaagattgcagtcttcacctggcag
ggttgcagtgtgaatctttacgggaagccagaggtggcttacgtgtcaaaggatactccc
atgctgctctacctgaacacacacgctgccctggaacagatgagaaaacaggcagaacgg
gacaacgagagggggccgagggtgatggtagtaggaccgacagatgtgggaaagtcaaca
gtgtgccggctgctccttagctatgctgtgagggttggcaggaggcccacactggtggaa
ctggatgtcggacagagtggggtgtctgtacccgggacagtgtcagcactgtgcattgag
cgtccagcagatgtggaggagggtttctcagtccaggctcctttggtctaccactttggc
tccacaactccagggaccaacatcaaactttacaacaagctgacgtcatgcctggccgaa
gtgttttcccagcgttgtgaagtcaacaggaaggccagtgtgggaggctgtatcatcaac
acttgtggctgggtgaagggctctggataccaggctctggtccactgtgcctctaccttt
caggtggatgtcgtgctagtgttggaccatgaaaggctatacaatgaactcaaacgagac
ctccctcactttgtgcgggttgtgctcctacccaagtccgggggagtggtggagcgttcc
aaggagtgtcggcgggacacacgggatgagaagatccgcgagtatttctatggtttccgc
ggagtctcctactaccctttttcttttgaagtccgcttctcagacgtccgcatctacaag
atcggggctccatctatcccggactcgtgcttgccactgggaatgtctcaggacgacaca
cagctaaaactggtgcccgtgacacctgggagggacctcacgtatcatgtactgagcgtg
agcagtgtcgaagatggcgacgagggagctagaaaaggcatagtggagagccccgtgtgt
ggctttatcgtggtaacgtacgtggacactcagacacaggttatgaaagtgctgtcgcca
gcacccagaccattgcccagacatactctgcttatcatggacattcgcttcatggatatg
aaatga
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integrated database retrieval system
