Mastomys coucha (southern multimammate mouse): 116078330
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Entry
116078330 CDS
T07224
Symbol
Slc6a4
Name
(RefSeq) sodium-dependent serotonin transporter isoform X1
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04721
Synaptic vesicle cycle
mcoc04726
Serotonergic synapse
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
116078330 (Slc6a4)
04721 Synaptic vesicle cycle
116078330 (Slc6a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mcoc02000
]
116078330 (Slc6a4)
Transporters [BR:
mcoc02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
116078330 (Slc6a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF
5HT_transport_N
Motif
Other DBs
NCBI-GeneID:
116078330
NCBI-ProteinID:
XP_031209321
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
METTPLNSQKVLPECKDKEDCQENGVLQKGVPTPADRAEPGQISNGYSAVPSTSAGDEAP
HSMPAATTTLVAEIHQGERETWGKKMDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLP
YTIMAIFGGIPLFYMELALGQYHRNGCISVWRKICPIFKGIGYAICIIAFYIASYYNTII
AWALYYLISSFTDELPWTSCKNSWNTGNCTNYFAQDNITWTLHSTSPAEEFYLRHVLQIH
QSKGLQDLGTISWQLALCIILIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVLLVRGA
TLPGAWRGVVFYLKPNWQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQD
ALVTSVVNCMTSFVSGFVIFTVLGYMAEMRNKDVSEVAKDAGPSLLFITYAEAIANMPAS
TFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWAKRREWFVLIVVITCILGSLLT
LTSGGAYVVTLLEEYATGPAVLTVALIEVVVVSWFYGITQFCSDVKEMLGFSPGWFWRIC
WVAISPLFLLFIICSFLMSPPQLRLFQYNYPHWSIILGYCIGTSSVICIPIYIIYRLIST
PGTLKERIIKSITPETPTEIPCGDIRMNAV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggagaccacacccttgaactctcagaaagtgctgccagagtgtaaggacaaagaggac
tgtcaagaaaatggtgttctgcagaagggtgtccccacaccagcagacagggcagagccc
ggccaaatatccaatgggtactctgcagttcccagcacaagtgcaggagatgaagcacca
cactctatgccagctgccaccaccaccctggtggctgagattcaccaaggggaacgggaa
acctggggcaagaagatggatttcctcctatctgtcattggctatgccgtggacctgggc
aacgtctggcgttttccctacatatgctaccagaatggcggaggggccttcctcctccct
tacaccatcatggccatctttggggggatccctctcttttacatggagcttgcactgggc
cagtaccaccgaaatgggtgcatttctgtatggaggaagatctgcccgattttcaaaggc
attggctatgccatctgcatcattgccttttatatcgcttcctactataacaccatcata
gcctgggcgctctactacctcatctcctccttcacggacgagctgccctggaccagctgc
aagaactcttggaacactggcaactgcaccaactacttcgcccaggacaacatcacctgg
acactccattccacgtcacctgctgaggagttttacttgcgccatgtcctgcagatccac
cagtctaagggactccaggacctggggaccatcagctggcagctggcactctgcatcata
ctcatcttcaccattatctacttcagcatctggaaaggagtcaagacatctggcaaggtg
gtgtgggtgacagccaccttcccttacattgtcctttctgtcctgctggtgaggggggcc
acccttcctggagcctggagaggtgttgtcttctacttgaaacccaactggcagaaactc
ttggagacaggggtgtgggtagacgctgcagcgcagatcttcttctctcttggcccgggc
tttggggttcttctggcttttgccagctacaacaagttcaacaacaactgttaccaagac
gccctggtgaccagtgtggtgaactgcatgacgagctttgtctctggctttgtcatcttc
acggtgcttggctacatggctgagatgaggaacaaagatgtgtccgaggtggccaaagac
gcgggccccagcctccttttcattacatatgcagaagcgatagctaacatgccagcatcc
acattctttgccatcatcttcttcctcatgttaatcaccctaggtttggatagcacgttt
gcaggcctggaaggtgtgatcacagctgtgctggatgagtttcctcacatctgggccaag
cgcagggagtggtttgtgctcatcgtggtcatcacttgcatcttgggatccctgctcaca
ctgacctcaggaggggcgtatgtggtgaccctgctggaggagtacgccacgggaccagca
gtgcttaccgtggccctcatcgaggtcgttgtggtgtcttggttctatggaatcactcag
ttctgcagcgacgtaaaggagatgctgggcttcagcccgggatggttttggaggatctgc
tgggtggccatcagccctctctttctcctgttcatcatttgcagttttttgatgagccca
ccccaactacggcttttccaatacaattatccccactggagtatcatcttgggctactgc
ataggaacgtcgtctgtcatctgcatccctatatacatcatttatcggctgatcagcact
ccagggacacttaaggagcgcattattaaaagtatcactcctgaaacaccaacggaaatt
ccgtgtggggacatccgcatgaatgctgtataa
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