Mastomys coucha (southern multimammate mouse): 116078330
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Entry
116078330 CDS
T07224
Symbol
Slc6a4
Name
(RefSeq) sodium-dependent serotonin transporter isoform X1
KO
K05037
solute carrier family 6 (neurotransmitter transporter, serotonin) member 4
Organism
mcoc
Mastomys coucha (southern multimammate mouse)
Pathway
mcoc04082
Neuroactive ligand signaling
mcoc04721
Synaptic vesicle cycle
mcoc04726
Serotonergic synapse
Brite
KEGG Orthology (KO) [BR:
mcoc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
116078330 (Slc6a4)
09150 Organismal Systems
09156 Nervous system
04726 Serotonergic synapse
116078330 (Slc6a4)
04721 Synaptic vesicle cycle
116078330 (Slc6a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mcoc02000
]
116078330 (Slc6a4)
Transporters [BR:
mcoc02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
116078330 (Slc6a4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF
5HT_transport_N
DUF8005
DUF8620
Motif
Other DBs
NCBI-GeneID:
116078330
NCBI-ProteinID:
XP_031209321
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
METTPLNSQKVLPECKDKEDCQENGVLQKGVPTPADRAEPGQISNGYSAVPSTSAGDEAP
HSMPAATTTLVAEIHQGERETWGKKMDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLP
YTIMAIFGGIPLFYMELALGQYHRNGCISVWRKICPIFKGIGYAICIIAFYIASYYNTII
AWALYYLISSFTDELPWTSCKNSWNTGNCTNYFAQDNITWTLHSTSPAEEFYLRHVLQIH
QSKGLQDLGTISWQLALCIILIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVLLVRGA
TLPGAWRGVVFYLKPNWQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQD
ALVTSVVNCMTSFVSGFVIFTVLGYMAEMRNKDVSEVAKDAGPSLLFITYAEAIANMPAS
TFFAIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWAKRREWFVLIVVITCILGSLLT
LTSGGAYVVTLLEEYATGPAVLTVALIEVVVVSWFYGITQFCSDVKEMLGFSPGWFWRIC
WVAISPLFLLFIICSFLMSPPQLRLFQYNYPHWSIILGYCIGTSSVICIPIYIIYRLIST
PGTLKERIIKSITPETPTEIPCGDIRMNAV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggagaccacacccttgaactctcagaaagtgctgccagagtgtaaggacaaagaggac
tgtcaagaaaatggtgttctgcagaagggtgtccccacaccagcagacagggcagagccc
ggccaaatatccaatgggtactctgcagttcccagcacaagtgcaggagatgaagcacca
cactctatgccagctgccaccaccaccctggtggctgagattcaccaaggggaacgggaa
acctggggcaagaagatggatttcctcctatctgtcattggctatgccgtggacctgggc
aacgtctggcgttttccctacatatgctaccagaatggcggaggggccttcctcctccct
tacaccatcatggccatctttggggggatccctctcttttacatggagcttgcactgggc
cagtaccaccgaaatgggtgcatttctgtatggaggaagatctgcccgattttcaaaggc
attggctatgccatctgcatcattgccttttatatcgcttcctactataacaccatcata
gcctgggcgctctactacctcatctcctccttcacggacgagctgccctggaccagctgc
aagaactcttggaacactggcaactgcaccaactacttcgcccaggacaacatcacctgg
acactccattccacgtcacctgctgaggagttttacttgcgccatgtcctgcagatccac
cagtctaagggactccaggacctggggaccatcagctggcagctggcactctgcatcata
ctcatcttcaccattatctacttcagcatctggaaaggagtcaagacatctggcaaggtg
gtgtgggtgacagccaccttcccttacattgtcctttctgtcctgctggtgaggggggcc
acccttcctggagcctggagaggtgttgtcttctacttgaaacccaactggcagaaactc
ttggagacaggggtgtgggtagacgctgcagcgcagatcttcttctctcttggcccgggc
tttggggttcttctggcttttgccagctacaacaagttcaacaacaactgttaccaagac
gccctggtgaccagtgtggtgaactgcatgacgagctttgtctctggctttgtcatcttc
acggtgcttggctacatggctgagatgaggaacaaagatgtgtccgaggtggccaaagac
gcgggccccagcctccttttcattacatatgcagaagcgatagctaacatgccagcatcc
acattctttgccatcatcttcttcctcatgttaatcaccctaggtttggatagcacgttt
gcaggcctggaaggtgtgatcacagctgtgctggatgagtttcctcacatctgggccaag
cgcagggagtggtttgtgctcatcgtggtcatcacttgcatcttgggatccctgctcaca
ctgacctcaggaggggcgtatgtggtgaccctgctggaggagtacgccacgggaccagca
gtgcttaccgtggccctcatcgaggtcgttgtggtgtcttggttctatggaatcactcag
ttctgcagcgacgtaaaggagatgctgggcttcagcccgggatggttttggaggatctgc
tgggtggccatcagccctctctttctcctgttcatcatttgcagttttttgatgagccca
ccccaactacggcttttccaatacaattatccccactggagtatcatcttgggctactgc
ataggaacgtcgtctgtcatctgcatccctatatacatcatttatcggctgatcagcact
ccagggacacttaaggagcgcattattaaaagtatcactcctgaaacaccaacggaaatt
ccgtgtggggacatccgcatgaatgctgtataa
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