Musca domestica (house fly): 101890003
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Entry
101890003 CDS
T03448
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mde
Musca domestica (house fly)
Pathway
mde03020
RNA polymerase
mde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mde00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101890003
09124 Replication and repair
03420 Nucleotide excision repair
101890003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mde03021
]
101890003
03400 DNA repair and recombination proteins [BR:
mde03400
]
101890003
Enzymes [BR:
mde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101890003
Transcription machinery [BR:
mde03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101890003
DNA repair and recombination proteins [BR:
mde03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101890003
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF3137
Motif
Other DBs
NCBI-GeneID:
101890003
NCBI-ProteinID:
XP_058975051
LinkDB
All DBs
Position
Unknown
AA seq
1892 aa
AA seq
DB search
MSTNDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVI
DRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPSNPK
IKEVVLKTKGQPRKRLAYVYDLCKGKKICEGGEDMDMTKDGQPADPNKKPGHGGCGHYQP
SLRRTGLDLTAEWKHVNEDSQEKKIQVTAERVWEILKHITDEECFVMGMDPKYARPDWMI
ITVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVILENIKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDL
RFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFITREQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTH
PDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFY
GNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNSLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTV
KLSNKSFEKRFKFDWSNERYMRKVFTDEVIKELSESGNALPELEIEWDQLCRDREALREI
FPNGDSKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPLRVINGVRDLLQRCVIVVGNDRI
SKQANENATLLFQCLVRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAAR
DAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEENKF
QDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIIITETGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDASAHAETD
PMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIANTIGSSILGGSGMFFGAVSTPS
MSPPMTPWQNCGTPRYFSPSGQMSGMTPGGPSFSPSAASEASGMSPNWSPAHPGSSPSSP
GPPMSPFFPPSPSVSPSYSPTSPNYTASSPGGASPSYSPLSPNYSPTSPAYGSISPRYSS
TTPNFNPQSTGYSPSTSRYSPSSPVYSPTSPFHTSSPSYTGSGGSNMYSPTSAYSPTSSN
YSPNSPSYSPTSPSYSPSSPSYSPSSPCYSPTSPSYSPSSPTYTPVTPSYSPSSPNYSSS
PHYSPASPAYSQTGVKYSPSSPKYSPPSPSYDGSPGSPQYPPGSPQYSPASPKYSPSSPL
YSPTSPQHSPANQYSPTGSSYSAASPRYSPNNMSVYSPGSTKYSPTSPTYTPTTRNYSPA
SPMYSPTAPSHGYSPTSPAYSPSSPTYEESED
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaaacgattccaaggcgcctttgcgccaggtgaaacgtgtgcagtttggcatc
ctatcacccgatgaaattcgtcgtatgtctgtgacagagggtggcgtgcaatttgccgaa
acgatggaaggtggacgtcccaaattgggtggtctcatggatccccgacagggtgtcatc
gatcgtacatcacgttgtcagacttgtgctggcaacatgacagaatgtcccggtcatttt
ggtcacatagatttggccaaacccgtctttcacattggctttataacaaaaaccatcaaa
atcttacgatgcgtttgcttttattgttccaaaatgttggtatctccctcgaatcccaaa
atcaaagaagtcgttttgaaaaccaaaggacaaccacgtaaacgcttggcttatgtctat
gatttgtgcaagggcaagaaaatttgcgaaggtggtgaagatatggacatgacaaaggat
ggccaaccggctgatcccaataagaaacccggacacggtggttgcggtcattatcaacca
tcattgcgtagaacaggtttagatttgacagctgaatggaagcatgtaaatgaggattca
caggagaaaaaaattcaagtcacagccgaacgagtatgggaaattttgaaacacattaca
gacgaagaatgctttgttatgggcatggatccaaaatatgcacgtcccgattggatgatt
attaccgtattgccagttccgccattggctgtaagacctgcagtcgttatgtttggtgcg
gccaagaatcaggacgatttaacgcacaagctatctgatatcatcaaagccaacaatgaa
ttacgtaaaaatgaagctagtggtgccgccgctcacgttatattagaaaatataaaaatg
ttacaatttcatgtggcgacattggttgacaacgatatgcccggtatgccaagggctatg
caaaaatccggtaaaccattgaaagctatcaaatcccgtttgaagggtaaggaaggtcgt
attcgtggtaatttgatgggtaaacgtgtggatttctcagcacgtactgtcattactcct
gatcccaatttacgtatcgatcaggtcggtgtaccacgatcgattgctcaaaatttaact
tttccggaactggtgacacccttcaatatcgatcgtatgcaagaattggtacgacgtggt
aattcacaataccccggtgccaagtatattgtgcgagacaacggtgaacgtattgatttg
cgtttccatcccaaaccatccgatttacatttgcaatgtggctataaagtggagagacat
ttacgcgatgatgatttggttattttcaatcgtcagcccacactacacaaaatgagtatg
atgggtcatcgtgtcaaagtgttaccatggtcaacattccgtatgaacttgtcctgtacc
tctccctacaatgctgattttgacggtgatgaaatgaacttgcatgtgccacaatccatg
gagaccagagctgaagtagaaaatattcacgttacccctcgtcaaattattacaccacag
gccaacaaacccgtcatgggtattgtgcaggacacactgacagctgtacgtaaaatgacg
aaacgtgatgtcttcatcacgcgcgaacaaatgatgaatctattgatgttcttgcccact
tgggatggcaaaatgcctcaaccttgtattcttaaaccaaaacccctgtggacaggcaaa
caaatattcaccttgattattcctggcaacgtaaacatgatacgtacccattccacacat
cctgacgatgaagacgatggtccctacaaatggatatctcccggtgacaccaaggtaatg
gtagagcacggtgaattaattatgggtattctttgtaagaaaaccctgggtacatctgcc
ggttctctgctgcatattgtcttcttggaattgggtcacgaaattgctggtcgtttctac
ggtaacattcagactgtaattaacaactggttgctgttggaaggtcacagtatcggtatt
ggtgatacaattgccgatcctcagacctataacgaaattcagatggctattaagaaagcc
aaagacgacgtcatcaacgttattcaaaaggcccacaacatggaattggaacccactccc
ggtaatacactgcgtcagactttcgagaatcaagtaaatcgtattttgaacgatgctcgt
gacaaaactggtggctcagctaagaaatctttgactgaatacaacagtttaaaggctatg
gtggtgtcaggttctaagggttccaacattaatatctcccaggttattgcttgtgtaggt
caacagaacgtagaaggtaaacgtataccatacggtttccgcaagcgtaccctgccccat
ttcatcaaagacgattacggtcctgagtccagaggtttcgtagaaaattcataccttgcc
ggtttgacaccatccgaattctatttccacgctatgggtggtcgtgaaggtcttatcgat
acagctgtaaaaactgccgaaactggttatatccagcgtcgtcttataaaggctatggaa
tctgtaatggtaaactacgatggtaccgtgcgtaattcagttggtcagctgattcagttg
cgttacggtgaggacggtttggcgggagaaacggtagagttccagaacttgccgaccgtt
aagttgtcgaacaaatcatttgaaaagagattcaaatttgattggtccaatgagcgttat
atgcgtaaggtgttcaccgatgaagtgataaaggaattgagtgaaagcggcaacgctttg
ccagaacttgaaatagaatgggaccagctgtgccgcgatcgtgaggcgctaagagaaatt
ttccccaatggcgattccaaagttgtattgccttgtaatttacagagaatgatttggaac
gtgcagaagatcttccacatcaacaaacgcatgcccacagatttgtctcctctacgagtt
ataaatggtgtgcgtgatctattgcaacgctgtgttattgtggtgggtaacgatcgtatc
tcaaaacaggccaatgaaaacgccactctattgttccaatgtttggtgcgttccacatta
tgtaccaaatatgtggccgaagaattccgtttgtccacggaggcctttgaatggttgatt
ggtgaaattgaaacaagattccaacaagcccaagccaaccctggcgagatggtgggtgcc
ttggctgcccagagtttgggtgaacctgccacacagatgacactgaacactttccatttt
gctggtgtatcctcaaagaacgtaacattgggtgtaccccgtctaaaggaaattattaac
atttccaagaagcctaaggctccttctctcactgtgttcctgactggcggtgcagctcgt
gatgcagaaaaggccaagaacgtattgtgtcgcctggaacacactacgctgcgtaaggtg
acagccaatacggcaatctactatgatccagatccacaacgcaccgtcattgctgaagat
caagaatttgtcaatgtttactatgaaatgcctgatttcgatcccacacgcatctcacca
tggctgttacgtatcgaactcgatcgcaagcgtatgacagataagaaattgaccatggaa
cagattgctgagaaaattaatgctggttttggtgatgatcttaattgtatcttcaatgat
gacaatgccgataagctggtcttacgtattcgtatcatgaacaacgaagagaacaaattc
caagatgaagatgaggctgtcgacaagatggaggacgatatgttcttgcgttgcattgag
gccaatatgttgtcagacatgacactgcagggtattgaggccattggcaaagtgtacatg
catttgccgcagacggacagtaagaaacgtattatcattacggagacgggtgaatttaag
gccattggcgaatggttgctggaaactgacggtacttctatgatgaaagttctgtccgaa
cgtgatgtagatccagtgagaacgtcgtctaacgatatttgtgagattttccaagtattg
ggcattgaagctgtgcgtaaatctgtggaaaaggaaatgaacgctgtgttgcagttctac
ggtctttatgtaaactatcgtcatttggccttgttgtgtgacgtaatgacagccaagggt
catttgatggccattacacgtcacggtatcaatagacaggatactggtgctcttatgaga
tgttcattcgaagaaacggtagatgtgttgttggatgcttcggctcatgctgagactgat
cctatgagaggtgtatctgagaatattattatgggtcaattgccaaagatgggaacaggt
tgtttcgatttgctgttggatgcagaaaaatgtcgctatggcattgaaattgccaatacg
attggttcgagcattttgggtggttctggaatgttctttggcgctgtatcaacacccagc
atgtcaccaccaatgacgccttggcagaattgtggaacacccagatatttctcaccatcg
ggtcaaatgagcggtatgacaccgggaggacctagcttctcgccatctgccgcctctgaa
gcttctggtatgtcacccaattggtcaccagcccatccgggctcatcgccaagttcacct
ggaccaccaatgtcacccttcttccccccatcgcccagtgtgtcaccatcatactcgcca
actagtccaaattatacggcttcttcgcctggaggtgcctcgcccagctactctccactc
agtccaaattattcgcccacaagtccggcatatggttcaatatcaccacgctactcttcg
actacgcccaactttaatccccaatcaactggctactcaccatcgacaagccgttattct
ccctcgtctccggtatactcgccaacatcacctttccacacttcaagtccttcgtatacg
ggcagtggtggttcgaatatgtactctccaacaagtgcttattctccaacgtcttcaaat
tattcgccgaattctccatcatattcaccaacttcaccatcttattctccctcaagtcct
tcatattcaccatcatcgccttgttactcgcccacttcaccatcctattcgccatcttct
ccaacatatacaccagtaactccatcatattcgccatcatctcccaactattcgtcttcg
ccacactattcgccggcctcaccggcatactcacagacaggagtgaaatattcaccttca
tctccgaaatattcaccaccctcaccatcctatgatggttcaccgggctcaccacaatac
cccccgggatcgccacaatattcgcctgcttcacccaaatattcgccatcctcaccgttg
tattcgccaacgtcgccacaacattcgcccgcaaatcaatacagtccaacaggttcgagt
tattcggctgcatcaccacgttattcgcccaacaatatgtcggtgtattcgcctggcagc
actaaatattcacctacttcaccaacgtacacaccaacaacgcgtaattattcgccggcc
tcgcccatgtattctccaacggccccctcacatggttattcaccaactagtccagcctat
tcaccaagtagtcccacctatgaagagagtgaagactaa
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