Methylorubrum extorquens DM4: METDI3199
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Entry
METDI3199 CDS
T00947
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mdi
Methylorubrum extorquens DM4
Pathway
mdi03030
DNA replication
mdi03410
Base excision repair
mdi03420
Nucleotide excision repair
mdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
METDI3199 (polA)
03410 Base excision repair
METDI3199 (polA)
03420 Nucleotide excision repair
METDI3199 (polA)
03440 Homologous recombination
METDI3199 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mdi03032
]
METDI3199 (polA)
03400 DNA repair and recombination proteins [BR:
mdi03400
]
METDI3199 (polA)
Enzymes [BR:
mdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
METDI3199 (polA)
DNA replication proteins [BR:
mdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
METDI3199 (polA)
DNA repair and recombination proteins [BR:
mdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
METDI3199 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
METDI3199 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
Taq-exonuc
HHH_5
HHH_2
EME1-MUS81_C
Motif
Other DBs
NCBI-ProteinID:
CAX24851
UniProt:
C7CM75
LinkDB
All DBs
Position
3122353..3125496
Genome browser
AA seq
1047 aa
AA seq
DB search
MTEETQPQPAKPVCADDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCT
KIAQFLQEGAAGVKPTHLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVR
AFGLHAVELVRYEADDLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKG
KPGYRPERNLDREAIIAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYG
SLEQLLERASEIKQPKRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKL
VGFLKAMEFNTLTRRIAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVP
VDPETAAAPERTDGEAPPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAESVK
PFDTAAYETIATVAQLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYI
PLAHVKPEVKGGDLFGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYD
LSVLHRYGIDVTPFDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVT
FDRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIA
IDRNMLSRLSGDFSQILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQ
WATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATT
TGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLRE
AFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEAS
AFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAIN
APIQGTAADIIRRAMTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVME
EAPAPALTLRVPLVVEARAAGNWEEAH
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagagacgcaaccgcaaccggccaagcccgtctgcgccgatgaccgggtgata
ctcgttgacggctcgtccttcatcttccgagcgtacttccagtcgatcaatcaggaccag
aagtacaacacgcggccctccgacggcctgccgaccggtgcggtgcgcctgttctgcacc
aagatcgcgcagttccttcaggagggtgcggcgggtgtgaagccgacccatcttgggatc
gtcttcgacaaatccgagggctcgttccgcaaggagctgttccccgactacaagggccac
cgccccgacgccccggacgatctcaagcggcagatgccgttgatgcgcgacgccgtgcgc
gccttcgggctgcatgcggtcgagctggtgcgctacgaagccgacgacctgatcgcgacc
tacgcgcggcaggccgaggcgcgcggcgccgaggtcatcatcgtgtcctccgacaaggac
ctgatgcagctcgtctcggacaagatccggttctacgatttcgagtcaggcgccaagggc
aagcccggctaccgccccgagcgcaacctcgaccgcgaggcgatcatcgccaagtgggag
ggcctcgcgcccgagcagatcggcgacgcgctggcactgatcggcgacacttccgacaac
gtgccgggcgtgcccggcatcggcctgaagacggcggccgcgctcatcaaggaatacggc
agcctggagcagctcctggagcgggccagcgagatcaagcagcccaagcgccgggagatg
ctgctcgccaacatcgatcaggccaagctctcgcgccgcctcgtcgcgctcgaggaaagc
gtgccggtgccggtgccgctcgacgaactcggcgtgccgcagcccgatccgcagaagctc
gtcggcttcctgaaggccatggagttcaacaccctgacacggcgcatcgcgcagatgctc
catgtcgatcccgaagcggtgaagcccgatccatcactgctgccgggtgcgcagccccat
gcctacagcaatgcggccggcggcagcgacgccgtgccgttcttcggcgacgccgtgccg
gtcgatcccgagaccgccgccgcacccgagcggacggatggggaggcgccgcccgaggcg
ggcgaggccgatcccttcgccgatctcgacctgccggatcaggctccgaagaagaagcgc
ggctccaacgagccgacgcccgcgaccctcgtggccgcccgcgcggcggaatcggtcaaa
ccgttcgatacggccgcctacgagacgatcgccaccgtggcgcagctcgaggcttggatc
gccgagagttacgaggccggggtgatcgcggtcgataccgagaccgacgcgctcgacgcg
gccaaggcgggactcgtcggcgtctcgctcgccaccgcgccggggcgggccgcctatatc
ccgctcgcccacgtgaagcccgaggtgaagggcggcgacctgttcggcgagagcggggca
ggggccgatgcgtccgacaggcagcccggccagatcgatttcgacaccgccctcaagctg
ctcaagccgctgctcgaggatgccggcacgctcaaggtcggacagaatctgaaatacgac
ctctcggtgctgcaccgctacggcatcgacgtgacgcccttcgacgacacgatgctgatc
tcctacgtgctcgatgccggcaagggcgggcacggcatggacgagctcgcccgccgccat
ctcggccatcagccgatcaccttcgccgacgtcgccggcaccggccgcaacaaggtcacc
ttcgaccgcgtggcgatcgacaaggcgactgcctacgcggcggaagacgccgacgtcacc
ttacgcctgtggcggatgatgaagccgcgtctcgtcgccgagcaccgggtgacggtctac
gagacgctggagcgtccgctggtgccggtgctggcgcggatggagcgggccggcatcgcc
atcgaccgcaacatgctgagccgcctctccggcgacttctcacagatcctggcgcggctg
gaggaggagattcaggaggacgccggcgagcggtttcaggtctcctcgccgaagcagatc
ggcgacgtgctgttcggcaagatgggcctgcccggtgcgaagaagacgccgtccggccag
tgggccacgcccgcgacgcttctcgaagagctggcccaggccggccacgacctgccgaag
aagattctcaactatcgccagctttccaagctgaaatcgacctataccgattcgctgcag
cagcacgccgaccgcggtacgaaccgggtccatacctcgttcgccctcgcggcgacgacg
accggccggctttcctcgtcggatccgaacctgcagaacatcccgatccgcacggaggag
gggcggcgcatccgccgcgccttcgtcgcgcccgagggtaagaagctgatctcggccgat
tacagccagatcgagctgcgcctgctcgcgcacatcgccgacatcccgcaattgcgcgaa
gcgttcgagcagggaatcgacatccacgcagccacggcgtcggccatgttcggcgtcgcc
ctcgaccagatgaccggcgatctgcggcgccgggccaagacgatcaatttcggcatcatc
tacggcatctcggccttcgggctagccgatcgcctcggcatcggccgcgaggaggcatca
gccttcatcaagcagtatttcgagcggtttcccggcattcgcgactacatcgacaccacc
aagcgctcgtgccgcgagaagggctacgtcacgaccctgttcggccgcgtctgccactac
ccgcagatccgctcgaacaacccgtccgagcgggcgagcgtggagcgccaagccatcaac
gccccgatccagggcaccgccgccgacatcatccgccgcgccatgacgcggatggaggat
gcgctggaggccaaaaggctcaccgcgcggatgctgctgcaagtgcacgacgaactcgtg
ttcgaggtgcccgacgacgaggtcgaggcgacgattcccgtgatcgccggggtgatggaa
gaggcgcccgcgccggccctgacgctgagggtgccgctggtggtcgaggcgcgggcggcg
ggcaactgggaagaggcgcactag
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integrated database retrieval system
