KEGG   Malus domestica (apple): 103442053
Entry
103442053         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103442053
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103442053
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103442053
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     103442053
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 103442053
NCBI-ProteinID: XP_008379016
LinkDB
Position
15:2829006..2835872
AA seq 1203 aa
MGASSDAKGDIGMSSKGESFTNGVDMDIDDSDYDDEHDYSTSLNDLGEGLLKNFCKEAAT
SFFNEYGLISHQINSYNDFIKNGIQRVFSSFGEIVVEPGYDPSKKGDNEWRYALVKFGTV
TLGRPSFWGGSDNDKEYNMLPRHARLQNMTYCSKMKVNITVEVYNQRLVSSDKFKTGKER
FLDKEILSTDTRDITVGSVPVMVKSDLCWMKDVEKGDCDFDHGGYFIIKGAEKTFIAQEQ
SCLKKLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIEGVEKVLTVYFMSTEIPVWV
WFFALGVSSDREVIDLIDYGSEDASILNILFASIRDADKATEKVDGGFRRGKNALKYVDD
VIKKTAFPPGESIEECISLYLFPNLRGLKQKARFLGYMVKSLLQASAGRRKCDNRDDFRN
KRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRVVRPIEHYLDASIVTNGISRAFS
TGAWCHPFKRMERMSGVVANVGRANPLQTMIDMRKTRQQVQYTGKVGDARYPHPSHWGKV
CFLSTPDGENCGLVKNLATTGLVSTNVLESLLPELSLCGMEKLVDDTSTSLQGKLKVFLN
GDWVGVCEDSLSFVSELRRMRRRKKLPPQVEIKRDEKQGEVRVYSDAGRILRPLLVVENL
NKIKAFKGGKYPFQYFLDKGIIDLIGAEEEEDCSTAWGIKYLFMEEKGKSAVKYTHCELD
MSFLLGLSCSIIPFANHDHARRVLYQAQKHSAQAIGFSTTNPNLRVDTLSHQLHYPQRPL
FQTMTSDCLGKPGHQLGQNRVLPKPELHNGQNAIVAVNVHLGFNQEDSIVMNRASLERGM
FRSEHIRSYKAEVDNKDSLEKRRKPDDCVNFGKMQSKFGRVDNLDEDGFPYVGANLQSGD
IIIGRCSESGADHSIKLKHTERGMVQKVVLSSNDDGKNFAVVSMRQVRSPCLGDKFSSMH
GQKGVLGFLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGQKRYA
TPFSTLSVDDIAKQLHRAGFSRCGKERVYSGGTGQMVRSLIFMGPTFYQRLIHMSEDKVK
FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQVYICQ
KCEHVANVIQRSVEGGRKIRGPYCRNCNSADDLVKANVPYGAKLLCQELFSMGISLKYET
RFS
NT seq 3612 nt   +upstreamnt  +downstreamnt
atgggggcgtcgtcggatgccaagggagatatcggtatgagcagcaagggagaaagtttt
acaaatggtgttgacatggacatcgacgatagtgactatgatgatgaacacgattactcg
actagccttaacgacctgggggaaggacttctgaagaatttctgcaaggaggcagcaaca
tcattcttcaacgagtatggcctcattagtcatcaaatcaactcatacaacgacttcata
aaaaatggcatacaaagggtcttcagttcttttggtgagattgtagttgagcctggctat
gacccgtcgaagaagggagataacgaatggcgctatgctttagtgaagtttgggactgtt
acccttggcaggccaagtttttggggtggttctgacaatgataaggagtataatatgttg
cctaggcatgctcgacttcagaacatgacgtactgctctaagatgaaagtgaatatcacc
gtcgaggtatataatcaacgacttgtcagtagcgataagtttaagactggaaaagaacga
tttcttgacaaggaaattttaagtacagataccagagacattacagttggtagtgtccct
gtgatggtgaagtccgacttatgctggatgaaggacgttgagaaaggtgactgtgatttt
gatcatggaggctattttataatcaagggtgcagagaagacctttattgcacaagaacag
agttgtctgaagaaacttctcatcacaaataatcagggtctgacggtagcatataggtca
gaggtgaagaggcataggttaataattagactagtcggaatttctaaacttgaaaacatt
gaaggagtagagaaagtccttaccgtttacttcatgtcgacagaaatccctgtgtgggtg
tggttttttgcgcttggcgtttcatcggatagagaagttattgatctgattgattatggt
agtgaagatgccagcattttgaacatactttttgcctcaattcgcgatgccgataaagct
actgaaaaagtggatgggggcttccgtagggggaagaatgccctcaaatatgtggatgat
gtgataaagaaaactgcatttccacctggggaaagcatcgaagagtgcattagcttgtat
ctttttcccaatctcagaggcctaaagcaaaaggctcgctttcttgggtatatggtgaag
tccctgttacaagcctccgctggtcgcaggaaatgcgacaatagggatgactttaggaac
aagaggttggacttggcaggtgagcttctcgaacgagagctaaaggcgcatattggacat
gcaaggcggcgcatggcaaaggccttgcagagagacctctacggtgatcgggttgtgcgg
ccaattgaacactacctagatgcctccatagttactaatggcatctcgagagcattctca
actggagcatggtgtcatcccttcaagagaatggagaggatgtctggtgtagtggctaat
gttgggcgagcgaatccgctgcagacaatgattgatatgcggaagacaaggcagcaggtt
caatatacagggaaggttggagatgcaagatacccgcatccttctcactgggggaaagtt
tgctttctctcaaccccagatggtgagaattgtgggcttgtaaaaaatttggccaccact
ggattagtaagtacgaatgtattggaatctctactacctgaattgtctctctgtggaatg
gagaaattggtggatgatacttctacctcactgcaagggaagctcaaagtttttctgaat
ggggactgggttggagtttgtgaagattccctctcatttgtctcggaactcaggaggatg
cgacgtaggaaaaagttgccacctcaggtggaaatcaaaagagatgaaaagcaaggagaa
gtacgagtatattctgatgctggaaggatcctacgccctctcttggtagttgagaatttg
aacaagataaaagcatttaaagggggaaagtatccgttccagtattttcttgacaaagga
ataatcgatcttattggagctgaagaagaggaagactgtagtactgcatggggcattaaa
tatctgtttatggaagaaaagggaaaatcagctgtaaagtacacacactgtgagctggac
atgtcattcctgttgggtttaagctgtagcattatcccatttgcgaatcatgaccatgca
aggagggtcctctaccaggcccagaagcactcggcgcaggctattgggttttctaccaca
aatcctaaccttcgagtggatacgctgtctcaccaactgcactatccccagaggccactt
tttcagacaatgacgtcggactgccttggcaaaccaggacaccaactgggtcaaaacaga
gttttgccaaagcccgaattgcacaatggtcagaatgcgattgtggcagtcaatgttcac
ttgggattcaaccaagaggatagcatagtaatgaaccgggcatcattggaacgtggtatg
ttccgatctgagcatatcagaagttacaaggctgaggttgacaacaaggactccctggaa
aaaaggcggaagcctgatgattgtgtcaattttggcaagatgcagagcaagtttggccgt
gttgacaatctcgatgaggacggctttccatatgtcggtgcaaacttgcagagtggtgat
atcatcatcgggaggtgcagtgaatcaggagctgatcatagcatcaaactgaagcacacc
gaaaggggaatggttcagaaggttgtgctttcttctaatgatgacggaaagaactttgct
gttgtttcaatgagacaggttcgctcaccgtgtcttggagacaagttctcgagcatgcat
gggcaaaagggggttctaggttttctggagtcccaagagaacttccctttcacagtacag
gggatagttccagatattgttataaatccccatgcatttccgtcaagacaaactcctggt
caactcttagaagctgctttagggaagggaatcgcctctggtggtcagaagagatatgcc
accccgttctctactctctctgtcgatgacatcgcaaaacaactgcatagggctggattt
tcaagatgcggaaaagagagagtatacagtggtggcaccggtcagatggttcgttccctc
atattcatgggccccaccttttatcagcgtctgattcacatgtctgaagacaaagtaaag
ttccggaacactgggccagtccaccctctcacccgtcagccagtggcagatcggaagcga
tttggagggatcaagtttggagaaatggaacgtgactgcctaatagcacacggagcttca
gcaaacttacatgagcgcctcttcactctcagtgactcctcccaggtgtatatctgccag
aaatgcgaacacgtagctaatgtgatccaacggtcagttgaaggtggacgtaagatcagg
ggtccgtactgccggaattgcaattctgcagatgatcttgtgaaggcaaacgtcccgtat
ggagcgaagttactgtgccaggagctgttcagcatggggatcagtttgaaatacgagacc
cggttttcttaa

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