Monodelphis domestica (gray short-tailed opossum): 100028786
Help
Entry
100028786 CDS
T01031
Symbol
TARBP1
Name
(RefSeq) TAR (HIV-1) RNA binding protein 1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
mdo
Monodelphis domestica (gray short-tailed opossum)
Brite
KEGG Orthology (KO) [BR:
mdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mdo03016
]
100028786 (TARBP1)
03036 Chromosome and associated proteins [BR:
mdo03036
]
100028786 (TARBP1)
Enzymes [BR:
mdo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
100028786 (TARBP1)
Transfer RNA biogenesis [BR:
mdo03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
100028786 (TARBP1)
Chromosome and associated proteins [BR:
mdo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100028786 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
100028786
NCBI-ProteinID:
XP_007481657
Ensembl:
ENSMODG00000008504
LinkDB
All DBs
Position
2:156038805..156156864
Genome browser
AA seq
1661 aa
AA seq
DB search
MELVLAQALLSQSPDPRALLGAFCVWESPIPAERVETLRFLLQRLEEEQELGSNTSTRPA
TLLLQEAVREVATGHLVPLLRGLRANLVGVPAEEPSTPRDRRRRVLRAAGGALRSCARLS
GGPQLAAGLVHEALCDLLSLRPAVGLEEAETRAASVECGRLGAEEAVEVLVALGPCLRPH
EDRALLERLARAALAVALGNEEEEESGGEDGAATLVAARLLPAMGRSSAAALQALWDGLL
PEEEEPEKLDSAPPAFRVNRRLLVLSNLAERLLPTPGVGGAWDALEEEIPDARRCSRFWR
AVQDGLVQADGLTRKRARYLLQRAVEASAGLGAECSSGATDANGIWFSSQGLRRQTDPEP
SLFWWSEKKKEELLKFWENYILIMETLEGNQIHVIKPVLPKLNSLFDWAVSEEKACWLFH
PSWHMCIYKRMFESESKTLTKEGIIHFLELYETKGLPGAPGFSEFIIGPLMEALSESSLY
SRSPGHKIGSCSPLGMKLQTFLVTYVSLLSEDIKSSFLLKFIKKMTSRHWCAVPILFLSR
ALAHIPRCKVLGVEGLLALRDVLQCTMITHQILLRGAAQCYLLQTAMNLIDVEKVSFSDV
SNFLMSLRQEESLGRGTALWTELCDWLRVNENYFGEIRNCIDFSGRSSLNVYVQSLVQDY
IKSPTLETGGNCFMPDWYEAKLVALMILLAADVEEMKNKYSERKKTQNELKVFLHPLMDS
LMKLGTNAYIPLLKTDKCLQLLLKLLHTSSLKNPQTQDDGVLTLLQNSVMCTTESIFEFI
VRRLTASELKTVSDLERCHLYLTILNELVNLHGKVGWKNNNSIWRFISLLKNASILHLQD
VNNEKEPILGKQIQKVVSMECLAMVCGILTQKSGLHLDSLDIGILERFISSFHLNQIVRK
PHAEEQNSLFEESSSSQGWGRIVAQYVHDQWLCLSFLLNKYHTFIPNMEGEMLEPFLHVV
SKPVSTLQSALEALTILPSDQVLPVFHCMKILVPKLLCSSESLCIESFDMAWKIIYSLSN
TQLIFWSNLKAFVQFVFDIRVLTVAARTKGRAYSKIKEIIHKIIEMSTTKTGVFNILINY
CCQSWIVPTSDDLTLSQDHFFNARDYIELIIEGCIFGNVFRRDQRLIQDVQAFIENLGHE
CAANIVTENTNRDDHYVRICAIKFLCLLDGSNISHKMFIEDLAVKLLDKDVLVSRSKARY
YVNSLQHRVKNRVWQALLVLFPKFDQIFLDKIIGKIFEAGFVNNQASIKYLVEWIIILIL
HKFPQFLPKFWNCFCYGEEKLIMSICTFLSVLSHLDIIIQNIPDMKPVLKQALTVVLQWC
FNHNFSVRLYALLALKKIWALCKTLHVEEFDALTAVIESSLHQVENMHGAGNAKKNWQRI
QEHFFFAKFHPLKDYSLETIFYTLPRLSELVEDEWITIGKFIKFTDIPIDSAFQWYLSQT
ELCELKPSDWSQQDIGSNSVDEDNQSEWIDVQKKMIPWKNNVPDLELELIFPDRAAKLGK
SISRLIVVASLIDKPTNLGGLCRTCEIFGASALVVGSLHCINDKQFQHLSVSAEQWLPLV
EVKPLQLVDYLQKKKTEGYTTIGVEQTAKSSDLTEYCFPEKSLLLLGNEREGIPANLIQH
LDVCVEIPQHGIIRSLNVHVSGALLIWEYTRQQIIKQRDIK
NT seq
4986 nt
NT seq
+upstream
nt +downstream
nt
atggagttggtgcttgcccaagcgctactctctcagagcccggacccccgcgccctgctc
ggggcgttctgtgtgtgggagtccccaatccctgcagagcgcgtggagacgctacggttt
cttctccagcggctcgaagaggagcaggagcttggcagcaacacaagcacgcgtcctgcg
acgctgctgttgcaggaggctgtgcgcgaggtcgcgacgggccacctcgtgcccttgctt
cggggcctgcgggccaacctggtcggggtgccggccgaggagccctcgactcctcgcgac
cgccggcgccgcgtgctgagggctgcgggtggggccctgcgctcgtgtgcccgcctatcc
gggggtccccagctggcggccggactggtgcatgaagcgctttgcgacctgctctccctg
aggcctgctgtaggcctggaggaggcagagacccgagcagcctcagtggaatgcggccgg
ctgggcgccgaggaggcagtcgaggttctggtggccttgggcccctgcttgcggccccac
gaggaccgagcgctgctggaacggctggcgcgggcggctttggccgtggcgctggggaac
gaggaggaagaggaatccggtggcgaagatggggctgcgacgctggtggcggcacggctg
ctgccagcaatgggtaggagcagcgcggccgcgctccaagcgctgtgggacgggctcctg
ccagaggaggaggagccggagaagctggactctgcgccaccggctttccgcgtcaaccgg
cggctgctggtgctgagcaacctggcagagaggctgctgcccaccccaggcgtgggcgga
gcttgggatgccctggaggaggagatacccgatgcgcggcggtgctcgcgcttctggaga
gctgtgcaggacggcttggtgcaagctgatgggctgacccgcaagagagcccgctatctg
ctccagagggcagtggaggcttctgccgggttgggggccgaatgcagcagcggggccact
gatgcaaacggtatatggttctcatctcaaggactcagacgtcaaactgacccagaaccg
agtctgttttggtggtcagagaagaaaaaagaagaactcttgaaattttgggaaaactat
attttaataatggaaacacttgaaggaaatcagatacatgttataaaacctgtcttacca
aagctcaacagtttatttgactgggcagtgtcagaggaaaaagcatgttggctcttccat
ccatcctggcatatgtgtatttataaaagaatgtttgaaagtgaaagcaaaaccctgacc
aaagaaggcattatacactttttggagctctatgaaacaaagggtcttccaggtgcacca
ggattttctgagtttattattggaccactaatggaagccctttcagaaagttctttatat
agcaggtccccaggtcacaagataggaagctgttcccctttgggaatgaaattacagaca
tttttagtcacttatgtttccctcctttcagaagacataaagagtagtttcctattgaaa
tttattaagaagatgacaagtaggcactggtgtgctgttcccattttattcctgtcccgg
gctctggcacatatcccaagatgtaaagtgcttggggtggaaggccttcttgctctcagg
gatgttcttcagtgtactatgatcacacatcagattcttttaaggggagcagctcagtgc
tatcttcttcaaacagctatgaatttgattgatgtggaaaaggtgtcattttcagatgtc
tcaaatttcctcatgtccttgagacaagaggaatccttaggcagaggtactgcactgtgg
acagagctctgtgactggttgcgggttaatgagaactactttggagaaatccgcaattgc
attgacttttctggcaggagttccttaaatgtgtatgtacagagcctagtgcaagactat
attaaatcacctaccttggaaacaggaggaaattgctttatgcctgattggtacgaagct
aaacttgttgctctgatgatcctgcttgctgcagatgtggaggaaatgaaaaataaatat
agtgaaaggaagaaaacacaaaatgaattaaaggttttcttgcatcctcttatggattcc
cttatgaagcttggtacaaatgcttatatacccttgctgaaaacagacaaatgcttacag
ttgttgttgaaattattacacacttcttcactgaaaaatccccaaacacaagatgatggg
gtgttaactcttcttcagaattctgtcatgtgtactacagaaagtatttttgaatttatt
gtcagaagactgacagccagtgaactgaaaactgtttcagatctagaacgttgtcactta
tacttaacaatattaaatgaacttgtgaatttacatggaaaggttggttggaaaaacaat
aactccatttggagattcatctctcttttaaaaaatgcatccattctacatcttcaggat
gtcaataatgaaaaggaaccaatacttggtaaacagattcagaaagtagttagtatggaa
tgtttggcaatggtctgtgggatcctcacccagaagtcaggtctgcatcttgattcccta
gatattggaattctggaaagattcatttcttcttttcacctcaaccagatagtaagaaag
ccacatgctgaggaacaaaacagtttgtttgaagaatcatcttcttcccagggatggggg
agaatagttgcacaatatgttcatgatcagtggctctgcctctcattcctattaaacaaa
tatcatacttttataccaaacatggagggagagatgctggaaccctttctgcatgttgtt
tcaaagccagtaagcactttgcagtctgcgttagaagccctcacaattcttccttctgat
caagttttaccagtgtttcattgcatgaaaatactggttcctaaacttctttgctcctct
gaatcactctgcattgagtcttttgatatggcttggaaaattatttattctttgagcaac
acacaactgatattctggtctaatttaaaagcttttgtccagtttgtctttgatatcaga
gttcttactgtggctgccagaaccaagggccgggcatattcaaaaataaaggagattata
cataagataattgaaatgtctacaacaaagactggggttttcaatatactcataaattat
tgctgtcaatcttggatagttcctacttcagatgatttgactctgtcccaagatcacttc
ttcaatgctagagattatattgaacttattattgagggttgcatctttggaaacgtgttt
aggcgagatcagaggcttatacaggatgtacaagccttcatagaaaatcttggacatgaa
tgtgcagcaaatattgtcacagaaaataccaacagagatgaccattatgtgagaatttgt
gctatcaaatttctttgtttattggatggatcaaatatttcacacaagatgtttatagaa
gatcttgcagtcaagctactagataaagatgttctggtatccaggtctaaagcgcgttac
tatgtgaattctttgcaacatagagtaaaaaatagagtatggcaggctctgcttgtactc
tttcccaaatttgaccagatcttcttggataagattattggcaagatttttgaagcagga
tttgtcaataaccaagcatccataaaatatttagtagaatggattattatattgattctt
cataaatttccccagtttcttccaaaattctggaattgtttttgttatggtgaagaaaag
ctcataatgagtatctgcacatttttatcagttttgtcacatttggatatcattattcag
aatatacctgatatgaaaccagttctaaaacaggctcttactgttgtactgcagtggtgt
ttcaaccataattttagtgttcgactttatgctttattagctcttaagaaaatctgggct
ttgtgcaaaactttgcatgtagaggagtttgatgctttgactgctgttatagaatccagc
cttcatcaagtggaaaacatgcatggagcagggaatgccaaaaagaattggcaaagaatt
caagagcatttcttttttgcaaagttccatccacttaaggattatagcctagagaccata
ttttatacccttccacgcctttcagaacttgttgaagatgagtggatcactattggtaaa
tttataaaattcactgacattccgatagattcagcatttcagtggtacctttctcaaact
gaactttgtgaactaaaaccaagtgactggtctcagcaagatataggttccaattcagtt
gatgaagacaatcagtcagagtggattgatgttcaaaagaaaatgatcccttggaaaaat
aatgttcctgatttagaactcgaattgatatttccagatcgtgctgccaaacttggaaaa
tccattagtagattgattgtagtagcttcactcattgataaaccaaccaatttaggaggt
ttgtgccggacctgtgaaatatttggggcctcagctctagtagtaggtagtcttcactgt
atcaatgataagcaatttcaacatctcagtgtttctgcagaacagtggcttcctctggtg
gaggtaaaaccacttcagcttgttgattacttacaaaagaaaaaaacagaaggctatact
accataggtgtagaacaaactgccaaaagttcagacttaacagaatattgttttcctgag
aaatctctgctcttattgggaaatgaacgtgagggaattccagcaaacctaattcagcat
ttggatgtatgtgtggaaattcctcagcatggcatcatacgttcccttaatgttcatgtg
agtggagctctgctgatttgggagtatacaaggcaacagataatcaagcaaagagatata
aagtga
DBGET
integrated database retrieval system
