Manihot esculenta (cassava): 110604705
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Entry
110604705 CDS
T05761
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110604705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110604705
Enzymes [BR:
mesc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110604705
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
110604705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110604705
NCBI-ProteinID:
XP_021598672
LinkDB
All DBs
Position
17:complement(1658531..1684810)
Genome browser
AA seq
1422 aa
AA seq
DB search
MQNTRQKTQEILYTKQPYIENVGPRRIKSMQFCMMSGVEIIKAAECQVHLGVYYDSNRKP
VQAGLLDTHMGPANKNSTCQTCGAGFHECPGHFGYLNLVLPVFNVGYISNILDILKCICK
SCSHILLGDKLYKEQLRKMRNPKIDPLRKSDLMKMMVKKCSTMVSNKAVKCTRCGEMNGM
VKKAGSALSIIHDRGKIIDGYVDECKSAISHTKEYRAPISPATYILNPARVLSLFERISE
EDCEVLGLADRPEKLIITNVAVPPIPIRPSVIMDGSQSNENDLTERLKQIIQANASLRME
LLEGRRSMNKYLDSWDGLQAAVALYVNSDVRVPNNVEVGKPLSGFVQRLKGKQGRFRGNL
SGKRVEYTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLKQCVSNGPHKYP
GARMVRHPDGSSNVLTGTYRKRIAEELKVGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHR
ARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI
LVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDIVDLPTPAILKPIELWTGKQL
FSVLLRPSANVRVFLNLIVKEKIYSKPKKGDTREKETMCPNDGFVYIRNSELISGQLGKA
TLGNGNKDGLYSVLLRDYKAHAAATCMNRLAKLSARFIGNHGFSIGIDDVQPGKKLIDEK
GKTISNGYQQCDKLIEEYNEGKLSLKPGCDAIQTLEAEITEKLNKLREEAGDVCMKELHW
RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPIKSKTPGAKGF
VANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRKLIKGLEDLSIQYDNTVRNA
SGCIVQFLYGDDGLDPAKMEGKGGFPLNLDRLFIKVKATSPAVEGDYLSPSDISIMVENL
IVKYDTALGSICTEAFKKSLRSFLGDHVKKLESMMKLVGGVEEESSEDIEVGAVRGDTKN
IEKVAHKIFGISKRQLEVFLRTCIDRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHF
AGVASMNITQGVPRIKEIINGAKKISTPIITAELENNTNVNAARIVKSRIQKTTLGQVAK
SIKIVMTSRSASVVVSLDMQTIQEAQLSLDANIVKESILRTPRIKIKPQNVKVLDIRKLE
VIPPGDREKVHFELHALKNLLPRIVVKGIGTVERVVIAQKKHDGKATDRELPTYNMLVEG
TGLQDVMGTEGVDGRKTTCNHVMEVHKYLGIEASRKCIIDEIKNVMEGHGMSIDIRHMML
LADLMTFKGEVLGINRFGIQKMEKSVLMLASFEKTADHLFHAAVNGRDDKIEGVSECIIM
GIPMQLGTGILKVQQRLQDPSPPLPCTFNNKEFILAHKLLDI
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatacgcgacaaaaaacacaagaaatactgtacacgaagcagccttacatcgag
aatgtaggcccacgcagaatcaaaagtatgcaattctgcatgatgtctggggtggagatt
atcaaagctgcagagtgtcaagtgcatttgggtgtgtactatgactctaatagaaagcct
gttcaagctggcttattggatacccacatgggtcctgccaataagaatagtacatgccaa
acttgtggtgctgggtttcacgagtgtcctgggcactttggatacttgaaccttgtattg
cctgtttttaatgttggatatataagcaatatcttggacattttgaagtgcatctgtaag
tcttgctctcatatacttttgggtgataagttatataaagaacaattgagaaagatgaga
aatccaaagatagatcccctgaggaaaagcgatctcatgaaaatgatggtgaagaagtgt
agtaccatggtgagcaataaagctgtgaagtgcacaagatgtggagagatgaatggtatg
gtcaagaaggctgggtctgcactaagcattattcatgatcgtggaaaaataattgatggc
tatgtggatgaatgtaaatctgcaatttcacacacaaaagagtatagggcaccaattagt
ccagctacatacattcttaatcctgccagagttttgtctctttttgagagaatttcagag
gaggattgtgaagtgcttggtctggctgacagacctgagaaactcatcataacaaacgtt
gctgtgccacctataccaatccgaccttctgttattatggatggatcacagagcaatgaa
aatgacctcacggagaggttaaaacaaattattcaggcaaatgctagccttcgtatggag
ttattggaagggaggaggagtatgaataaatatctggattcctgggatggtcttcaagct
gcagttgcactctatgtaaatagtgatgttcgtgttccaaataatgtggaagttgggaag
ccacttagtggctttgttcagcgccttaaaggaaagcagggacgatttcgtgggaattta
tctgggaagcgtgttgaatatactggcaggactgttatatcaccagaccctaatctgaaa
attactgaggtagcgattcccatccatatggctcggattctatcataccctgaacgtgtt
tcccatcacaatattgagaagttgaagcagtgtgtcagtaatggccctcataaataccct
ggtgccaggatggtcagacatcctgatggttcttcaaatgttttgacaggtacttacaga
aaacgcattgcagaggaactaaaagttggttgtatagttgatcgccatttggaagatgga
gatattgttctttttaacagacaaccaagcttgcatagaatgtctatcatgtgccatagg
gcaagagttatgccttggagaacattgagatttaacgaatctgtttgcaatccatataat
gctgattttgacggtgatgagatgaatatgcatgttccacaaacagaagaggctcgaaca
gaggctctcttgctgatgggagtgcaaaataatttatgcacaccaaaaaatggagagatc
ttggttgcttccactcaagattttctaacatcatcttttctcataacaaggaaggacaca
ttttatgaccgtgcagctttctcactcatgtgttcttatatgaatgatggcatggatatt
gttgatttgccaacacctgcaatactgaagccaatagagctttggactggtaaacaatta
ttcagtgtcctacttcgtccaagtgcaaatgtgagagtcttcctgaatctcattgttaag
gagaaaatctactccaaacctaaaaaaggggatacaagagaaaaagaaacaatgtgtccc
aatgatggttttgtttatatccggaacagtgagctaatatctggacagctgggaaaggcg
actcttggaaatggcaacaaggacggactttactctgtgcttcttagagactacaaagca
catgctgctgccacttgcatgaatcggctagctaaattgagtgctcgatttataggaaat
catggcttctcaattgggatcgatgatgtccaaccaggaaaaaaattgattgatgaaaaa
gggaaaacaatttcaaatggttatcaacagtgtgataaactaatagaggaatacaatgaa
ggaaagctttcacttaaacctggttgcgatgccattcaaacgctagaagctgaaataact
gagaaactaaataagcttcgagaagaagctggtgatgtatgcatgaaagaattgcattgg
agaaacagtccattgatcatgtcacagtgtggatcgaaaggatctcctattaatatcagc
cagatgattgcatgtgttggtcagcaatcagttggaggtcgccgtgcaccagatggattc
atagatcgaagccttcctcatttccctataaaatccaaaacccctggagctaaaggcttt
gttgctaattcattctatagcggtttgacggcaaccgaatttttcttccatactatgggt
ggaagagaaggtcttgtggacactgcggtcaaaacggctgacactgggtacatgtctcgt
aaactaatcaaaggactagaggacttgtctatccaatatgataatacagtgcgaaatgca
agtggatgtatagttcaatttctttatggggatgatggcttggatcctgcaaaaatggaa
gggaaaggtggatttccattgaatcttgatcgattgttcataaaagtgaaggccacctct
cctgctgtagaaggggactatctatctccatcagatatctccattatggtggaaaatttg
atagtaaagtatgatactgctcttggcagcatttgtactgaagccttcaaaaaaagtttg
cgttccttccttggagatcatgtgaagaaattggaaagcatgatgaaactggttggtggt
gttgaggaggaaagttctgaggatatagaagttggagctgtaagaggagatactaagaat
atagaaaaagtggcacataagatatttggtattagtaaaagacagctagaggttttcttg
agaacctgcatagatcgttacctttggaaaagagttgaacctgggactgcaattggtgca
attggtgctcaaagtataggagagcctggaacgcaaatgactttgaagacatttcacttt
gctggggttgcaagcatgaatataacacagggagttcctcgtatcaaagaaataataaat
ggggccaaaaagatcagtacaccaataattactgcggagcttgagaataatactaatgtg
aatgctgctcgaattgtaaaaagtcgcatccaaaagactactttaggccaggttgccaag
agtatcaaaattgtgatgacttcaagatcggcatctgtagtggtctcactggacatgcaa
acaatccaagaggcacaattatctttggatgctaacattgtgaaggaatcaatattacga
actccaagaattaaaataaagccacagaatgtcaaggttttggatattagaaagttggaa
gttattcctccaggtgacagagaaaaagttcactttgaactccatgctcttaaaaatctg
cttccaagaattgtggtaaagggcataggaactgttgaacgcgttgttattgcccaaaag
aaacatgacggtaaagcaactgaccgagagctcccaacatacaacatgttagtagaaggc
actggtcttcaagatgtcatggggacagaaggagtggatgggcgcaagacaacatgtaat
catgtaatggaagttcataaataccttggaattgaggcttcaagaaaatgcattattgat
gagataaaaaatgttatggaaggtcatggaatgagcattgacatacgtcatatgatgctt
ttagcagatctgatgacatttaagggcgaagttcttggaattaatagatttggcattcaa
aagatggaaaaaagcgtgttgatgttggcttcatttgaaaaaacagcagatcatcttttc
catgctgctgtaaacggtagagatgacaagattgagggagttagtgaatgtatcattatg
ggcatccctatgcagctaggcaccggtatactcaaagtacagcaaaggctgcaggacccc
tcaccacctttgccttgcaccttcaataacaaggagtttatcttggctcacaaactgctg
gatatttaa
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