Manihot esculenta (cassava): 110605501
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Entry
110605501 CDS
T05761
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110605501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110605501
Enzymes [BR:
mesc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
110605501
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110605501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
CbiA
AAA_22
ATP_bind_1
SRPRB
ABC_tran
FtsK_SpoIIIE
AAA_29
Motif
Other DBs
NCBI-GeneID:
110605501
NCBI-ProteinID:
XP_021599795
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All DBs
Position
17:complement(11642669..11647935)
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AA seq
439 aa
AA seq
DB search
MAYGGAATAMTAATAAPTIKQVKLERESELRIEVANDTPLRLRLLNGTAEIFGTELPPEM
WLTFPPRLKFAVFTWYGATIEMDGPTETDYTADETPMVSYVNVHAVLEGRRNRAKAPSSS
GSEASQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTYVDLDIGQGSITIPGCIAATP
IELPIDPVEGISLEMPLVYFYGHTTPSQNVDLYKALVKELAQILERQFTGNAESRAAGMV
INTMGWIEGVGYELILHAIDTFSANVVLVLGQEKLFSMLRDVLRNKPNVDVVKLQKSGGV
VSRSSKVRQKARSYRIREYFYGIANDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAD
PVANPLRVTAVNIDRDLLHVVLAVSYAQEPDQIVSSNIAGLIYITDIDLQRRKITYLTPT
AGDLPSKYLIMGTLTWLET
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttacggtggtgcagccacggccatgaccgccgcaaccgcagcgccgacgattaag
caagtgaaattggagagagaaagcgagcttagaatcgaagtagcaaacgacacgccgcta
cgcctgaggttactaaacggcaccgctgagatctttggcaccgagttgcctcctgaaatg
tggctcaccttccctcctcgcttaaaatttgctgtgtttacttggtatggagctacaata
gagatggatggtcctactgaaaccgattatactgctgatgagactcccatggttagttat
gtaaatgtccatgctgtactggaaggacgtagaaatcgcgccaaagccccatcctctagt
ggttctgaggcttctcagggtcctagggtgattgttgttggacctacagattctggaaag
agcaccttgtcaaggatgcttctcagttgggcagctaaacaaggatggaaacctacttat
gtggacttggatattggccaaggatctataacaattcctggatgcattgctgccacccct
attgagttgcccattgatccagtggaaggaatttctcttgaaatgccgctggtgtatttc
tatggtcacacaactcctagccagaatgtagatttgtacaaagcacttgtaaaagagctt
gctcaaatactagagagacaatttactgggaatgctgaatcacgtgctgcaggcatggtg
atcaacactatgggatggattgaaggtgtgggctatgagctgattctccatgcaattgat
acatttagcgccaatgttgtcttggttttgggtcaggagaaactttttagcatgctcagg
gatgtattaaggaacaaacccaatgtggatgttgtgaaacttcaaaagtcaggtggtgtg
gtatccaggagttcaaaagtccgccagaaagctaggagttataggattagggaatacttt
tatggcattgctaatgacctctctccacattcaaacatcgcaaattttagtgacttgttt
gtataccgaattggaggtgggccacaagccccaaggtcagctctgccaattggtgcggac
cctgtagccaacccccttagagttacagctgtgaatattgatcgagatttactccatgtt
gttcttgctgtttcatatgctcaagaacctgatcaaattgtttcaagtaatattgctggg
ttgatctatatcacggacattgaccttcagaggagaaaaattacttaccttacaccaaca
gctggggatctccctagcaagtatttgatcatgggaaccttgacctggctcgaaacgtaa
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