Manihot esculenta (cassava): 110607309
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Entry
110607309 CDS
T05761
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03020
RNA polymerase
mesc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110607309
09124 Replication and repair
03420 Nucleotide excision repair
110607309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110607309
03400 DNA repair and recombination proteins [BR:
mesc03400
]
110607309
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110607309
DNA repair and recombination proteins [BR:
mesc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110607309
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-GeneID:
110607309
NCBI-ProteinID:
XP_021602088
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All DBs
Position
10:17159574..17169837
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AA seq
318 aa
AA seq
DB search
MEGVSYQRFPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS
VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV
TSKDLYSSDHTVVPVDFSDPAGYDSPDQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS
PAATVTFMYEPDIHINEDLMETLTLEEKQSWVESSPTKVFDIDPVTQQVVVVDPEAYTYD
DEVIKKAEAMGKLGLVDISAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED
TVEADDQFGELGAHMRGG
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagtatcataccagcgcttccccagggtgaaaatccgagagctcaaagatgac
tatgccaaattcgagctccgagacaccgacgcctccatagccaacgctcttcgccgcgtc
atgattgctgaggttcccaccattgccatcgaccttgtcgaaatcgaagttaactcctct
gtcctcaacgacgagttcatagctcaccgccttggcctcattcctctcaccagcgaacgt
gccatgagcatgcgcttctcccgtgactgtgacgcatgcgacggggacggccagtgcgag
tattgctcagtcgagtttcacctgcgtgctaaatgtatcaccgaccaaaccttagacgtc
acgagcaaggacttatacagctctgatcacactgtagttcctgtcgatttctccgatcct
gcaggctatgattcacccgatcagaagggaatcatcattgtgaagcttcgccgcgggcaa
gaactgaggctgagagccatcgccagaaaagggattggaaaggatcacgcaaaatggtct
cctgcggcaactgtaactttcatgtatgagccggatattcatatcaatgaggatttaatg
gaaactttgacacttgaggaaaaacaaagttgggtcgaaagtagtcctaccaaagtgttt
gacatcgatcccgttacccaacaggttgttgtggttgatccggaagcatacacatatgac
gatgaagtgattaagaaagcagaagctatggggaagctcgggcttgttgatatcagtgca
aaggaagacagttttatattcacagttgaatcaactggtgcaattaaagcttctcagttg
gtgctcaatgccatagaagtcctaaaacaaaagctggatgctgttcgcttgtcagaagat
acagtggaagctgatgatcagtttggtgaactgggtgctcatatgcgtggaggatga
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