KEGG   Manihot esculenta (cassava): 110611371
Entry
110611371         CDS       T05761                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
mesc  Manihot esculenta (cassava)
Pathway
mesc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mesc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110611371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mesc03021]
    110611371
Enzymes [BR:mesc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110611371
Transcription machinery [BR:mesc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110611371
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 110611371
NCBI-ProteinID: XP_021607352
LinkDB
Position
3:complement(724375..733752)
AA seq 1205 aa
MGASVDAMEEDIGTSSKGEKLPNGLDMEMDFEDDDEDDEEEDEFIDLTTSLSDLGEGFLK
DFCKRAATLFFNEYGLISHQINSYNDFIHNGLQKAFDSFGELIVEPGYDPSKKGENEWRY
ASIRFGKVTLDKPSFWAGSDGGEHNMLPRHARLQNMTYSSRMKVNVNVEVYTRKIVRSDK
FKTGKDQFVDKVVLTTDNRDIIVGRMPVMVKSDLCWMKTVEKGDCDFDHGGYFLIKGAEK
VFIAQEQICLKRLWISNTQGWTVAYKSEVKRNRLIVRLVGLSKDDNIKGETKGLTVYFLS
TEIPIWILFFALGVKSDKEVVDLIDYNTENASIMNIFFASILDADEKCEGFRTERTALDY
VIKQIRGTRFPPGENEDFISLYLFPHLHSPRQKARFIGYMVKCLLQAYSGQRKCDNRDSF
RNKRFELAAELLERELKVHIAHARRRMAKVLQKDLYGDRDVRPIEHYLDASIVTNGLSRA
FSTGAWSHPFKRMERISGVVANLGRTNPLQTMVDLRKTRQLVQYTGKVGDARYPHPSHWG
RVCFLSTPDGENCGLVKNLAATGLVSTNISEPLVDKLFDCGMEKLVDDTNTKLHRKYRVF
LNGEWVGVCEDSHLFVAEFRRLRRRKRFHQQVEIKRDEQQREVRIFSDAGRILRPLVVVQ
NLTKIKAFKGGNYTFQSLLDKGIVEFVGTEEEEDCSIAWGVKFLLAGPDGKQSLKYTHCE
LDLSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLHYPQR
PLFRTMTSDCLGKPGYRRGHNGMLPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRSSLER
GMFRSEHIRSYKADVDNKELVDKRRRFDDPVNFGKIQSKIGRVDSLDDDGFPFIGANLQS
GDIVIGRCSESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRAPCLGDKFSS
MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSMR
HATPFSTLSVEAITDQLHRAGFSRWGSERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDK
VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSHMHI
CQKCKNVANVIQRGVPGGRKIRGPYCRVCESADDIVRVNVPYGAKLLCQELFSMGINLKF
ETRLC
NT seq 3618 nt   +upstreamnt  +downstreamnt
atgggggcatcagtggatgccatggaagaggatataggcacgagtagtaagggtgagaag
ctcccaaatggacttgatatggagatggattttgaagacgatgacgaagatgatgaagaa
gaagatgagtttatcgacttaacaactagcttaagcgatttgggtgaaggttttctaaaa
gatttctgtaaaagagctgcgaccctgtttttcaatgagtatggtctcattagtcaccag
atcaattcctacaatgacttcatccacaatggtctacagaaggcttttgattcctttggt
gaattgattgttgagcctggatatgacccatcaaagaagggagagaatgaatggcgatat
gcttcaattaggttcgggaaggtcactcttgataaaccaagtttttgggctggttcggat
ggtggtgagcacaatatgctccctaggcatgcaagacttcagaatatgacatattcatcc
aggatgaaagtgaatgttaatgtagaggtgtacacacggaaaattgttagaagtgataaa
tttaaaactggtaaagatcaatttgttgacaaggttgttctaactactgataacagagat
atcatagtagggaggatgcctgtaatggtgaagtctgatctttgctggatgaaaacagtt
gaaaaaggtgattgtgattttgatcatggaggctattttctgatcaaaggtgcagagaag
gtttttattgcacaagagcaaatttgtttaaagagactttggatctcaaatactcaggga
tggacagttgcgtacaagtctgaagttaaaaggaatagattaattgttagattagtaggg
ctctctaaagatgacaatattaaaggagaaacgaaaggtctaactgtatatttcttgtca
acagagatccctatatggatattgttttttgcccttggggtcaagtcagacaaagaagtt
gtagatttgattgattataatacagaaaatgccagcattatgaatatctttttcgcatca
attcttgatgctgatgaaaaatgtgaggggtttcgtacggaaagaactgctcttgattat
gtgattaagcaaatacgaggaaccagatttccaccaggggaaaatgaagatttcattagt
ttgtatttgtttccccatctccatagccctaggcaaaaggcccggtttataggttatatg
gtaaagtgtcttttacaggcatatagtggccaaagaaaatgtgataacagggatagtttt
agaaacaagagatttgagttggctgctgagttgcttgagcgagagttaaaagtacacatt
gcacatgcacgaaggcgtatggccaaggtcttacaaaaagatctatatggagatcgtgat
gtgcgcccaattgaacattatttggatgcttccatagtcacaaatggtctatcgagagct
ttctcaactggggcatggtcacacccatttaagaggatggaaaggatatctggggttgtg
gctaatttggggcgtacaaatccattgcaaacaatggtcgacttgcgaaaaacacggcaa
ctggttcaatacacagggaaggttggagatgctagatatccgcacccttctcactggggt
agagtttgttttctttctactccagatggtgaaaactgtggacttgtaaagaatttggct
gctactggacttgttagcacaaacatatcagaaccactggtcgataaattatttgattgt
ggaatggagaaacttgttgatgataccaatacaaaactgcataggaagtatagagtattt
ctgaatggggaatgggttggcgtatgtgaagattctcatttatttgttgctgagtttaga
cgtttgcggcggagaaagaggttccatcaacaggtggaaattaaaagagatgaacagcaa
cgagaagtacgcatattttctgatgctggaaggattttacgtccccttgtggttgttcag
aatttaactaagataaaagcatttaaagggggaaattacaccttccagtctcttcttgac
aagggaattgttgaatttgttggaacagaagaggaagaggattgcagcattgcgtgggga
gttaaatttcttctagctggacctgatggaaagcaatctctgaagtacacacactgtgaa
cttgacctgtccttcttattgggtttaagttgtgggatcattccctttgctaatcatgac
catgcaagaagagttctataccaggcgcaaaagcattctcagcaggctataggttttccc
acaacaaatcccaacatcagagtggacaccctgtctcaccaattgcactatccccaaaga
ccactttttcggacaatgacttctgattgtcttggaaaacctggatacagacgaggtcat
aatgggatgctgccaaaaccagagttatataatggccagaatgctattgtggcagtcaat
gttcatctaggttataatcaagaggactccttggtaatgaaccgctcttctttagagcgt
ggtatgtttcgatctgaacatatccgaagttataaggctgatgttgataataaagaacta
gtagacaagaggcgaaggtttgatgatcctgtgaattttgggaagatacagagtaaaatt
ggacgcgttgacagccttgacgatgatggttttcctttcattggtgctaatctacaaagt
ggtgatattgttattgggaggtgttctgaatctggggctgatcatagtgtgaaactgaag
cacactgaaaggggaatggtccagaaagttgtattgtcttctaatgatgaggggaagaat
tttgctgtggtgtctctgagacaggttcgtgctccatgtctgggagacaagttctctagc
atgcatggacaaaagggtgttctaggctttttggagtctcaagagaacttccccttcact
agacagggaatagttcctgatattgttataaacccacacgcatttccttcacgacaaact
cctggtcaactcttagaggctgctttgggaaaggggattgcctgcggtggctcaatgaga
catgccacccctttctccacactgtctgttgaggcaatcacagaccagcttcacagagct
ggattttcaagatggggaagtgagagagtttacaatggtcgaactggtgaaatggtccgt
tctctcatttttatgggtccaactttctatcagcggctgatccacatggctgaagacaaa
gtaaaatttcgtaacactgggcctgtgcacccactcactagacagccagttgctgaccgt
aagcgttttggtggtatcaagtttggtgagatggagcgggactgtctcatagctcatggt
gcatctgcaaacctgcatgagcgtctttttactctcagtgattcttcacatatgcatatt
tgccagaaatgcaaaaatgtggcaaatgtgattcaacggggagtgcctggtgggcgcaag
attaggggtccctactgccgagtttgcgagtctgctgatgatatagttagggtcaatgta
ccttatggggccaagttattgtgccaggagctcttcagcatgggcataaatttgaagttt
gaaactcgcctgtgttga

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