Manihot esculenta (cassava): 122722437
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Entry
122722437 CDS
T05761
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Module
mesc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122722437
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
122722437
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
NosD
Motif
Other DBs
NCBI-GeneID:
122722437
NCBI-ProteinID:
XP_043809070
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Position
18:21667661..21668898
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AA seq
346 aa
AA seq
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MTTLETYFSLTSLLLLFVFAGRVQSAVFDVKNYGGKADGKSDISKALLGAWKEACSAKGS
NIVVVPKGTYSIGLTDLNGPCKGAMELQVQGTLLAPINPSSYAKDSWITFAYIDQFKLSG
GGTFDGQGQVAWKQNNCGRNPKCKRLPVSLRFDFITNSVVQDVTLLDSKNFHVNLLGGKN
LTFDRFTITAPGDSVNTDGIHIGHSNGINIINSNIATGDDCISIGGASEQIRITNVRCGH
GHGISVGSLGKTTDEFVSGIFVRNCTFYDTDNGVRIKTWPALHGGMASDMHFEDIMMKNV
CNPIIIDQMYCPWNQCNPKVTRKEMKMKESLNALSVDKSARNMKFL
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccctggagacgtatttttccctgacatctttgctattattgtttgtttttgct
ggtagagttcaatctgccgtatttgatgtgaaaaattatggtggtaaagccgatggcaag
tcagatattagcaaggcattattgggcgcgtggaaagaggcttgttcagcaaagggttcc
aacatagttgtagtacccaaaggaacatattccataggtttaactgacttaaatggtcca
tgcaagggagccatggagcttcaagtccaaggaaccttattggcaccgataaaccctagc
agttatgccaaggacagctggattacttttgcatacattgatcaattcaaattatccggt
ggtggaaccttcgacggacaagggcaagtggcttggaagcaaaataactgcggtcgaaat
ccaaaatgcaagagacttccagttagcttgcggtttgacttcatcaccaacagcgtagtt
caggacgtaacattgctcgatagtaagaatttccatgtcaatcttctaggtggcaaaaac
cttactttcgatcgcttcacgatcactgcaccaggagatagcgtcaatacagatggaatt
cacatcgggcattcaaacgggatcaacattattaattcaaatattgccaccggcgatgac
tgcatctccattggtggtgccagcgaacaaataaggatcacaaacgtacgatgtggacat
ggacatggcattagcgtgggaagtttagggaagaccactgatgaatttgtctctggaatt
ttcgtaaggaactgcaccttctatgacaccgacaatggagtgagaattaagacatggccg
gcattacatggtggcatggcctctgatatgcatttcgaggatattatgatgaaaaatgtc
tgcaaccctatcattatagatcaaatgtactgcccatggaatcagtgcaatccaaaggta
acgcgaaaagaaatgaaaatgaaagagtctcttaatgcattgtccgtggacaaatctgcc
cgcaacatgaaatttctgtaa
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