Mangifera indica (mango): 123225734
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Entry
123225734 CDS
T07684
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123225734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123225734
Enzymes [BR:
minc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123225734
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
123225734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
123225734
NCBI-ProteinID:
XP_044505791
LinkDB
All DBs
Position
9:4963986..4982074
Genome browser
AA seq
1723 aa
AA seq
DB search
MNPTAEVATEAVKAVWFSLLTDEEVRKHSFLKITEPQLLDQLDRPLPGGLYDPALGPLDE
TSPCKTCGQRQFNCPGHFGHIDLVFPVYNPLLFNFLYNLLQRTCFFCHHFRAGRSEVEKC
VSQLEFIIKGDIVAAKRLESLNESLNPEDSDGSHKSCSSVNSAVQCDNVNNLKQQIWTSL
QSSEAKSVLQDFLNIKPTKCRNCKAKNPSISKPTFGWIHMSGMSRAHIRENIIRGRTIGE
SFAGETEPDGDDSSDVDTAETPAFGDTAGRRYQKDSGKMPYELKNQKDSFSGPLLPSEAK
NIVKNLWENEVELCSFITDMQQQGFGKKAGHCIFFLETILVPPIKFRLPSKGGDSVMEHP
QTVLLSKVMQCNIYLGNAYVNKSEHSKIIARWMDLQQSINVFFDGKTATGQGQRDLASGI
CQLLEKKEGLFRQKLMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNV
VKLRDAIINGSENHPGATHYVDKFNTMRLPPNRKQRVSISRKLPSSRGSFVQPGMDSEYE
FEGKTVYRHLQDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSTYNADFDGD
EMNVHFPQDEISRAEAYNIVNANNQYVRPSNGDPLRSLIQDHIVSAVLLTKKDTFLNFDE
FNQLLYSSGVLSSGLGSFSGKPGQKVSMSSSEEEVLPLQPTIWKPEPLWTGKQIITAVLN
HITKGHPPFTVQRDGKIPQDFFKTRPNEGQFSDKEGNDGGKLSTKNKMSKAKQNKEREVG
GNKPIDIKEAAKNISKRNELNEEKLLIYKNDFVRGVIDKAQFADFGLVHTVQELYGSNTA
GILLSALSRIFTVFLQLHGFTCGVNDLLIRNEKDRERKKQLEECEKIGKEIHLKALQHED
DADVKDVIEVKDSDEIDPRKLILKIEKTIRSGGEAAIAYFDRQMTGALNKCTSSGVINEL
LSEGLVKPTGKNCISLMTTSGAKGSKVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFHP
WDWTPRAGGFIIDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK
ISYDHTVRDADGSVIQFLYGEDGVDVHQTSFITKFEALAANQEMIYKKCGDQLDSSNGYI
MDLPDALKDKAEKFVDEHPLKERIFSNLMKQQDFLKLLKHKFILSLAQPGEPVGLLASQS
VGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILTIASKDIKTPVMTCPLRVEKTQDDAK
RLADKLKKITVADIVDSMEVSVMPFAVHDDQTCSIYKLKMKLYKPKHYPKHANISVKDWE
EILEVVYVRELEDAIQNHMVLLSKISGIKDFSSGLPPRASNEDGEVSVSRSQNKGENDDD
VDDEDGVETEDLGLDAQKQKQQATDERDYEDDSEEELNEGSSAGFGSEIDQAENDDEHDE
SEKEIENDQVENEVEISKDQTSESLSHLEESSITSPSKKTAKRKKKARAKLVKKETDRSI
YVAAKGYHFEVHFKFINEPHILLAQIAQNTAKKVAIQRSGKIDQCRVINCKENQVIYYGK
DPKKRVKIEPEEKEKIPAISTAGVDFNALWQLQDYLDVRYVYSNNIQAMLETYGVEAARE
TIIREINHVFNSYGISVNTRHLSLIADFMTHTGGYRSMSRLGGIAESVSPFSKMTFETAS
KFIVEAAYYGEVDKLETPSARICLGLPVKVGTGSFDLMQKLEI
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaacggccgaggttgcaacggaggccgtaaaagcagtttggttcagtcttttg
acagatgaagaagttcgaaagcatagttttcttaagatcacagaaccccaattattggac
cagcttgatagacccttgcctggtggattgtatgatcctgctttgggccctttagatgag
acttcaccttgcaaaacttgtggccaacgtcaatttaactgcccgggtcattttggtcat
attgaccttgtttttccagtttataatcccttgctgttcaattttctttataaccttcta
cagaggacctgtttcttttgccatcattttagggctggcaggagtgaggttgagaaatgt
gtttctcaattggaattcatcataaaaggagatattgttgctgccaaaaggttggagtca
ctaaatgaatccttgaatccagaggacagtgatgggagccataaatcatgttcttctgtt
aactctgctgtacaatgtgacaatgtcaacaatttaaagcagcaaatatggacatcactt
cagtcttccgaggcaaagtcggttttacaagattttctaaatattaaacccacaaagtgt
cggaattgcaaagcaaaaaatccttctatcagcaagcctacttttggatggattcacatg
agtggtatgtcacgtgcccatatcagagaaaatattattagaggccgcacaataggagag
tcatttgctggtgagacagaacctgatggagacgactctagtgatgttgataccgctgaa
acacctgcatttggtgatacagctggaagaaggtatcagaaagattctggaaaaatgcct
tatgagctcaaaaaccaaaaggattcattttctggacctttattgccatcagaggctaaa
aatattgtgaagaatttgtgggagaatgaggttgaactttgttcattcatcactgatatg
cagcagcaaggatttggaaagaaagcaggtcactgtatattcttcttagagaccattctt
gtacctccaataaaattccgcctcccttctaaggggggtgattctgtgatggagcatcca
caaactgtattgctgagtaaggttatgcaatgcaatatatatttgggaaatgcttatgtt
aacaagtcagaacactcaaaaataattgctcggtggatggatcttcagcaatccataaat
gtgttttttgatggcaaaactgccacaggtcaaggtcaaagagatttagcttcaggaata
tgccagttgttagaaaaaaaggaaggcttattccgtcagaagttgatgggaaagagggtt
aactttgcgtgccggtctgtcatttctcctgatccttatttagctgtgaatgagattgga
attcctccatattttgcgctaaggctaacctatccagagagggtgaccccttggaatgtt
gtaaagttgagggatgcaattatcaatggttctgagaatcatcctggggcaacacactat
gttgacaagttcaatactatgagattgccaccaaacagaaaacagcgtgtttccatctca
agaaagcttccttcatcaagaggttcttttgtgcaacctggcatggactctgaatatgaa
tttgaaggtaaaacagtatatcgacacttgcaagatggggatgttgtgcttgtcaatcga
cagcctacacttcacaaacccagtataatggctcacgttgttcgggtgctcaagggggag
aagacacttcgtatgcactatgcaaattgcagcacttataatgctgattttgatggtgat
gaaatgaatgttcattttcctcaagatgaaatatctcgtgctgaagcttataacattgtc
aatgcaaataatcaatatgttagaccttccaatggtgatcctcttagatccttgattcag
gatcatattgttagtgcagttctccttacaaaaaaggatacctttttaaattttgacgag
tttaatcagcttctgtatagttctggtgtgcttagtagtgggctgggttctttttctggc
aagccgggccagaaagtttccatgtcaagttcagaagaagaagtgctgccccttcagccc
acaatatggaagccagagcccctttggacaggaaagcagatcattactgctgtgctaaat
catattacaaaggggcaccccccatttactgttcaacgagatgggaaaatcccacaagat
tttttcaagactagacctaatgaaggtcaatttagtgacaaagaggggaatgacggaggc
aaattgagcacaaagaataagatgtctaaagctaaacaaaataaagaaagagaggttggt
ggaaataaacctattgatattaaagaggctgccaagaatatatcaaagcgaaatgagctt
aatgaagaaaaacttttaatctataaaaacgactttgtacgtggtgtgattgacaaggcc
caatttgccgactttggtttggttcatacagtgcaggagctgtatggatcaaatacagca
ggcattttgctttcagcattgagccgtatattcactgtttttctgcagctgcatggcttt
acatgtggagtaaatgatcttttgataaggaatgaaaaagacagagaaaggaagaagcaa
cttgaggagtgtgaaaaaataggcaaagaaattcatctgaaagctcttcagcatgaggat
gatgctgatgtcaaggatgttattgaagttaaggacagtgatgaaattgaccctagaaaa
ttgatattgaaaatagaaaagactatacgtagtggtggagaagctgctatagcttatttt
gataggcagatgacaggtgcactcaataagtgcacaagctctggtgtcatcaatgagctt
ttgtctgaaggattagtaaaacctactggaaagaattgcatatcccttatgacaacgtcc
ggggctaaaggtagtaaggttaattttcagcaaatatcttctcatttgggtcaacaagaa
ttagaaggcaaacgagtccctcgaatggtttctggaaagactttacccagctttcatcca
tgggattggacacctcgagcagggggctttattattgatcgatttcttactggtcttcgt
ccgcaagaatattacttccattgtatggctggtcgtgaagggttggttgatactgcagtc
aaaacatctcgcagtggatacctgcaaagatgcctaataaaaaatcttgagtccctgaaa
atttcttatgatcatactgttcgtgatgctgatggttccgttattcaatttctatatgga
gaagatggtgtggatgtccatcaaacaagctttatcacaaaatttgaagccctagcagcg
aatcaagaaatgatttacaaaaagtgtggtgatcagcttgattcatccaatggttatatt
atggatttgccggatgctcttaaggacaaagcagagaagtttgttgatgaacacccattg
aaagaacggatcttctctaatttaatgaaacaacaggacttcttgaaattactgaagcac
aagttcatcttaagtcttgcccagccaggagaacctgttggcctgctggcttctcaatct
gtgggagaaccttctacacagatgacgttgaatacttttcatcttgctgggcgaggtgaa
atgaatgtcacgcttggaattccacgtctacaagaaatcttgacaattgcttcaaaggat
attaagactccagtgatgacatgccccttgcgtgttgagaagacacaggatgatgccaaa
cgtcttgctgacaagttgaagaaaataacagtggctgatatagttgacagtatggaagta
tctgtcatgccatttgctgtccatgatgaccagacatgtagtatttacaagctcaaaatg
aagctttacaaacctaaacactatccaaagcacgccaatatctctgtgaaagactgggaa
gaaattttagaggttgtgtatgtcagggagttggaggatgcaatacagaatcatatggtt
ttgctctccaaaattagtggcatcaaagatttctcctcaggtttgccaccgagggcttca
aatgaggatggagaagtttctgtcagcagatcacaaaataagggagaaaatgatgatgat
gtagatgatgaggatggcgtagagactgaggaccttgggttggatgcacaaaagcaaaag
cagcaggctacagatgagagagattatgaggatgattctgaagaggaactgaatgaaggg
tcatcagctggatttggaagtgaaattgatcaggcagagaatgatgatgaacatgatgag
agtgaaaaggagattgaaaatgatcaggtggaaaatgaagttgaaattagtaaggatcaa
acctctgaaagtctgtcacaccttgaagaatcctctataacaagtccaagcaagaagacg
gccaaacgaaagaagaaagccagggcaaaattagtgaaaaaggaaacagatagatcaatt
tatgtagcagcaaaaggttaccactttgaggttcattttaaatttataaatgaacctcac
attttactggctcagattgctcagaatacagccaagaaggttgccattcagaggtctgga
aagatagatcagtgcagagttattaactgcaaagaaaatcaagtaatttattatggaaaa
gatcccaaaaaaagggttaaaatcgagcctgaagaaaaagaaaaaatcccggcaatcagt
actgcaggagtggatttcaatgcattatggcagttgcaagattatcttgatgtcaggtat
gtatactcaaataacattcaagctatgctagaaacatatggagttgaagcggccagagaa
accatcatcagggagataaatcatgtattcaattcttatggaatatctgtcaatactcgc
cacctaagtcttattgctgactttatgacccatacgggtggataccgatcaatgagccga
cttgggggcatagcagaatcagtatcgccttttagtaaaatgacttttgagacagcttcc
aagttcattgttgaagcagcatactatggggaggtggacaagttagaaactccatctgct
aggatctgtctaggcttgccagtgaaggtgggtactggatcctttgatttgatgcaaaaa
ttggaaatttga
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integrated database retrieval system
