Mangifera indica (mango): 123225774
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Entry
123225774 CDS
T07684
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123225774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123225774
Enzymes [BR:
minc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
123225774
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123225774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
CbiA
AAA_24
T2SSE
AAA_22
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
123225774
NCBI-ProteinID:
XP_044505948
LinkDB
All DBs
Position
1:22374542..22383367
Genome browser
AA seq
437 aa
AA seq
DB search
MAYAGSLDEILPSDSTARQIKLEKESELRIEVGNDAPLRLRLLNGSAEIYGTELPPEIWL
TFPPRLKFAVFTWYGATVEMDGITETDYTADETPMVSYVNVHAVLEGRRNRAKAAAAKGS
DTFLGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPLFVDLDIGQGSITIPGCIAATPIE
LPIDPVEGIALEMPLVYSFGHTTPSNNVDLYKVLVKELAQVLEKQVTANVESQVAGMVIN
TMGWIEGVGYELILHAIDSFNANVVLVLGQEKLFSMLRNILRKKPDVDVVKLQKSGGVVS
RNAKIRQKDRSCRIREYFYGLTNNITPCASVANFSDLLVYKIGGGPQAPRSALPVGADPV
ANPLRLVPVNIDRDLLHSVLAISYAKEPDQLLSSNVAGFIYVTEVDTQGKTVTYLGPSAG
NLPSKYLIMGTLSWLEA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcttacgctggctcgctggacgaaattttaccttcggattcaaccgcgaggcaaatc
aaattggagaaagagagtgaactgagaatcgaagtcggtaacgatgcgccgctccggctt
cggcttcttaatggcagcgccgagatttacggaactgagttacctcccgaaatctggctc
actttccctccgcgacttaaatttgcagtttttacatggtatggagccacagttgaaatg
gatggcataactgaaactgattatacagctgatgagactcccatggttagttatgtaaac
gtacatgctgtgctagaagggcggagaaaccgcgccaaagcagccgcggcaaagggctct
gacacttttctgggtcctagggtaattgttgtgggacctacagattctggaaagagcacc
ttgtcacggatgctgcttagttgggcagctaaacaaggttggaaacccctgtttgtggac
ttggatattggccaaggatctataacaatacctggatgtattgctgctactccaattgaa
ttgcccattgatccagttgaagggattgcacttgaaatgcctcttgtttactcctttggg
cacacaactccaagcaacaatgtagatttgtacaaagtgcttgtgaaggagcttgcccaa
gtattggagaaacaagttactgctaatgtggaatctcaagtggcagggatggtgatcaat
accatgggatggatagaaggtgttggatatgagttaattctccatgcaattgattcattc
aatgccaatgttgtcttggtattgggtcaggagaaacttttcagcatgctgaggaatata
ttaaggaaaaaacctgatgttgatgttgtgaaacttcaaaagtcaggtggtgttgtttcc
aggaatgcaaaaatccgtcagaaggacagaagttgtaggataagggaatacttttatggt
ctcacaaacaatatcaccccatgtgctagtgttgcaaatttcagtgatttgcttgtctat
aaaattggtggcggaccacaggcacctagatcggctctaccagttggtgcagatcctgtt
gccaaccctctgagattagtgcctgttaatattgaccgggatttgctgcactcagttctt
gctatttcttatgccaaagaacctgatcaacttctctcaagtaatgtcgccgggtttatc
tatgtcaccgaagtcgacacacaggggaagacagttacatatcttggaccatcagcaggg
aatcttccgagcaaatatctgataatgggaactttgtcatggcttgaagcgtga
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