Mangifera indica (mango): 123228628
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Entry
123228628 CDS
T07684
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
minc
Mangifera indica (mango)
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
minc03016
]
123228628
Enzymes [BR:
minc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
123228628
Transfer RNA biogenesis [BR:
minc03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
123228628
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
TRAM
Motif
Other DBs
NCBI-GeneID:
123228628
NCBI-ProteinID:
XP_044509997
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Position
11:14485537..14493242
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AA seq
621 aa
AA seq
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MEDIEDLLLGNGGGGAAPGFRLPLNAVGVNPRKNNNKPKLTKLDHPLVSKVPGTQTIYIK
TFGCSHNQSDSEYMAGQLSAFGYALIENPEEADLWLINTCTVKSPSQSAMDTLITKCKTA
KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKTLPALDL
PKVRKNKYVEIVPINVGCLGACTYCKTKHARGHLGSYTVDSLVSRVRSVIADGVKEIWLS
SEDTGAYGRDIGVNLPILLNALVAALPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV
YTFLHVPVQSGSDTVLIAMNREYTVSDFRTVVDTLTALVPGMQIATDIICGFPGETDEDF
AQTVSLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNMVKKRSRELTSLFEAFTPYNGME
GTLERIWITDFAADGIHLVGHTKGYVQVLVIAAVSMLGASAIVKITSVGRWSVFGEVIET
LNQVDHKAASNERKSGQDRCSPCSNQDDSCASSNDPHCGTCGPESCGGEIALEASKVSRI
DKMAEDHSSRNLMGWLLKKRINHVHKVENDIASESMKKQRIKGRIGDYGITGRAVFGGVL
FSFVTIVAILLRLGFRTSPSQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggaagacattgaagatttgttgttaggtaatggaggcggcggtgctgctccaggtttc
aggttgcccctcaatgctgttggagtcaatcccagaaagaataacaacaaaccaaaactc
accaaacttgatcaccctcttgtttccaaagtccctggaacccagactatatatatcaag
accttcggatgttcgcataaccagagtgacagtgaatatatggctggtcagctttcagca
tttggttatgcattaattgagaatcctgaggaggcagacctttggctgataaatacatgc
acagtaaagtctcccagccaatctgccatggacactctaataacaaagtgcaaaactgcg
aaaaagcccctagtggttgctgggtgtgtgccacaaggaagccgagatttaaaagaacta
gaaggggtcagtatagttggagtccaacaaatcgatcgtgttgttgaagttgttgaagag
actttgaaaggtcatgaggtgcggctcttacatcgcaaaacactgccagctcttgacctt
ccaaaggtgagaaagaacaagtatgttgagattgttccaataaatgtcggttgcttaggt
gcttgcacttattgcaagacaaagcatgcacgaggccatttagggagctacactgttgac
agccttgtaagtcgtgtgagaagtgtaattgctgatggagttaaggagatatggttgagc
agtgaagataccggagcatatggtcgggacattggggttaaccttccaattttattgaat
gctcttgttgcggcacttcctcctgatggaagcacaatgcttcgaattggaatgaccaat
cctccgtttattcttgagcacttgaaagaaatagctgaagttttgcgtcacccatgtgta
tacacctttcttcatgtaccggtccaatctgggagtgatactgttttgatagcaatgaat
cgggaatacactgttagtgactttaggacggtggtagataccttgaccgcacttgtgcca
gggatgcagattgcaactgatataatttgtggattccctggtgaaacggatgaagacttt
gcgcaaactgttagccttattaaggagtacaagttttcccaagttcacatttcacagttc
tatcctaggcctgggacaccggcagcaaggatgaaaaaggtgccaagtaatatggtgaag
aaacgaagtcgtgaattgacatctctttttgaagctttcacaccatataatggaatggaa
ggtacattggaaagaatatggattactgactttgcagctgatggaatacacctggttggc
catacaaagggatatgtgcaggtccttgtaattgctgcagtaagtatgctgggtgcttca
gctattgtgaagataacatctgtaggaaggtggtcagttttcggagaagtgattgagact
ctcaaccaagtagaccacaaagcagcttctaatgagagaaaatctggtcaggacagatgt
tctccatgctccaaccaagatgattcatgtgcaagctcaaatgatcctcattgtggtact
tgtggaccagaaagctgtggaggagaaatagctctggaagcaagcaaagtttccaggatt
gacaaaatggcggaagatcatagcagtagaaatctgatggggtggttactaaagaagcgc
ataaaccatgtgcacaaggtagaaaatgatattgcatcagaatctatgaaaaagcaacgc
attaaaggaagaattggtgattatggtatcactggcagggctgtctttggaggagtgctt
ttcagcttcgtgacgattgtagcaattttattacgtcttggatttaggacatctccatcc
caatga
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