Macadamia integrifolia (macadamia nut): 122060477
Help
Entry
122060477 CDS
T07436
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122060477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122060477
Enzymes [BR:
ming01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122060477
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122060477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
SRPRB
FtsK_SpoIIIE
ABC_tran
ATP_bind_1
AAA_29
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
122060477
NCBI-ProteinID:
XP_042479507
LinkDB
All DBs
Position
14:3932447..3990507
Genome browser
AA seq
445 aa
AA seq
DB search
MAYAGGGGAPGLGGLSSSSSTSTSIRQVKLDKECELRIEVGIESPLRLRLLTGTAEIFGT
ELPPEIWLTFPPRLKFAVFTWYGATIEMDGTTETDYTADETPMISYVNVHAILEGRRNRA
KASSSSDSDSSQGPRVIVVGPTDSGKSTLSKMLLSWAAKQGWKPTFVDLDIGQGCITSPG
CIAATPIEMPIDPVEGIPLEMPLVYFFGHTTPSVNAELYKVLVKELSQTLERQFSGNAEA
RAAGMVINTMGWIEGVGYELLLHAIDTLNANVVLVLGQEKLCSMLKDVLRNKPNVDVVKL
QKSGGVVSRNAKVRQKARSYRIREYFYGLANDLSPHSNLVSFSDLSVYRIGGGPQAPRSA
LPIGAEPAADPMRLVPVNINRDLIHLVLAVSYAKEPDQIISSNVAGFIYITDIDIQRKKI
TYLAPSAGELPSRYLIVGTLTWIET
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcatatgcaggtggtggaggtgcgccagggcttgggggactgtcatcgtcctcgtcg
acgtcgacgtcgataagacaggtgaagctggacaaggagtgcgagctgaggatcgaagtc
ggtattgaatctcctcttcgtctccgtcttctcaccggcactgcagaaatctttggcacc
gaactccctcctgaaatttggcttactttccctcctcgtctcaagttcgccgttttcact
tggtatggcgccacaattgaaatggatgggactactgagactgattatactgcagatgag
acacctatgataagctatgtgaatgtacatgccatactggaagggcgaagaaatcgtgcc
aaagcatcctcaagcagtgactctgattcttctcagggccccagggtgattgttgtggga
ccgacagattcaggaaagagtaccctgtcaaagatgcttcttagctgggcagctaaacag
ggatggaaacccacttttgtggacttggatattggccagggatgtataaccagtccagga
tgcatcgctgctactccaattgaaatgccaatagatccagtggaaggaatccctcttgaa
atgccccttgtttacttttttgggcatacaacccccagtgtaaatgcagagttgtacaag
gtgcttgtgaaggagctttctcaaaccctagaaagacaattttctggaaatgctgaagct
cgtgctgctggtatggtgattaataccatgggatggatagaaggtgtcggttatgagtta
cttctacatgcaattgacacactcaatgccaatgtagttttggttctgggccaggagaaa
ctctgcagcatgcttaaagatgttctgaggaataagcctaatgtagatgttgtgaaactt
caaaagtcaggtggcgtggtatcgaggaatgcaaaggttcgccagaaggcaaggagctac
aggataagggaatacttttatggccttgcaaatgatctttcccctcactccaaccttgtg
agtttcagtgatttgtctgtatatcgaattggtggtgggcctcaagcaccacgttcggct
ctgccaattggtgcagagcctgcagctgaccctatgcggctggtccctgtgaatatcaac
cgtgaccttattcatttagttctcgctgtgtcgtatgccaaagaacctgatcagattatt
tccagcaacgtagctggatttatctatatcacagacatcgacattcagaggaagaagatt
acttacctagcgccatcagctggagaactcccgagcagatatttgatagttggaactttg
acatggatcgaaacgtga
DBGET
integrated database retrieval system
