Macadamia integrifolia (macadamia nut): 122084234
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Entry
122084234 CDS
T07436
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03020
RNA polymerase
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122084234
09124 Replication and repair
03420 Nucleotide excision repair
122084234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122084234
03400 DNA repair and recombination proteins [BR:
ming03400
]
122084234
Enzymes [BR:
ming01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122084234
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122084234
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122084234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
122084234
NCBI-ProteinID:
XP_042508254
LinkDB
All DBs
Position
7:complement(26901377..26914305)
Genome browser
AA seq
1833 aa
AA seq
DB search
MDTRYQFSPAEVKKVRRVQFGILSPDEIRQMSVVQIEHSETTEKGKPKPGGLSDPRLGTI
DRKVKCETCNANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILIDEDDHK
FKQALRIRNPKHRLKKILDASKNKAKCEGGDEINVEGQESEEPVKKSRGGCGAQQPKLTI
EGMKMIAEYKAQRKKSDDQDQLPEPVERKQQLSAERVLSVLKRISDEDCIKLGLNPEYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEFGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN
LMRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISKAKNEVKDLIRAAQEKQL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK
LDSLKMKKSEFNKVFRYEIDDESWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQ
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP
EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIEINLPSYMEGLDFGMTPSRSPITGTP
YNEGMMSPSYLLSPNIRSSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPTSPGYSPT
SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPSSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPSLAYSP
SSPRLSPSSPYSQSSPNYSPTSPSYSPTSPSYSPPSPTYSPSSPYNSGVTPDYSPSSPQY
SPSAGYSPTAPGYSPSSTSQYTPQGDKDEGSTR
NT seq
5502 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcgataccagttttctccggcggaggtcaagaaagtacgccgagttcagttc
ggcatactaagtcccgatgaaattaggcaaatgtcagtggtgcagatcgagcacagcgag
acgactgagaaggggaagccgaagcctggtggtttgagcgaccctcgactcggtactatt
gaccggaaggtgaagtgcgagacttgtaatgctaacatggcggaatgtcctgggcatttt
gggcatcttgagcttgctaagcctatgtttcatatcggattcatgaagactgtactcagt
atcatgcgatgtgtttgcttcaattgttctaaaattcttatcgacgaggacgatcacaag
tttaagcaagctcttcgaattagaaatccgaaacatagactgaagaagattttggatgcc
agtaagaacaaggccaaatgtgaaggtggtgatgaaataaacgttgaaggtcaagagtct
gaagaaccagtgaagaagagtcggggaggctgtggggcccaacaaccaaagctcaccatt
gaaggtatgaaaatgattgcggaatacaaggctcagaggaagaaaagtgatgaccaggat
cagcttcctgaacctgttgaaagaaaacagcagctttctgcagaaagggttctaagtgtt
ctaaagaggataagtgacgaagattgtataaaattaggtctcaatcctgaatatgcccgc
ccagattggatgattttacaagtccttccaattcctcctcctcctgtgagaccttctgtt
atgatggatacttcttcaaggagtgaggatgatttgacccatcaattagcaatgatcatt
agacataatgagaatctgagaagacaggagagaaatggagctcctgcacacatcatctca
gaatttgcacaattattgcaatttcacatagctacatattttgataatgagcttccaggt
cagccaagggctacacagcggtctgggaggcctattaaatcaatatgtagcagacttaag
gccaaggaaggtcggattagaggtaacttgatgggaaaacgtgtagatttttcagcacgt
accgtcattacacccgatccaaccatcaacattgatgagctgggggtgccatggagcatt
gctttaaacttaacatatccagaaactgtgactccgtataacattgaaaggttgaaagaa
cttgttgaatttgggcctcatcctccacccggaaaaaccggtgccaagtatatcattaga
gaagatgggcagaggctagatcttcggtacttgaagaaaagtagtgatcaccatctggag
cttggttacaaggttgagagacacctacaagatggagattttgttctttttaatcgacaa
cctagtctccataaaatgtctataatgggacacagaatcaagattatgccatactcaacg
tttcgcttgaacttgtcagtgacctccccatacaatgctgattttgatggtgatgaaatg
aacatgcatgttcctcagtcattcgaaacaagggcagaagtcttggagctcatgatggta
cctaaatgtattgtgtcgcctcaggcgaataggcctgttatgggtattgtccaggataca
ctgttaggatgccgtaagataaccaaaagagacacattcattgagaaggatgtttttatg
aatatattgatgtggtgggaggattttgacggaaaaatacctgctccagcaattttgaag
cctagacctctttggacgggaaagcaagtgtttaatcttatcattccaaagcagataaat
ctcatgaggacctcagcttggcactcggagtctgaaacaggatttataactccaggtgat
acacaagttagaatagagaaaggggaacttctggcaggcactctttgtaaaaagacactt
ggaacatccactggaagtcttattcatgtcatctgggaagaggtcggtccagacgcagcc
cgcaaatttttgggacatactcaatggcttgttaactattggcttctgcagaatgctttt
agtattggaattggggacacaattgctgatgcgtcaaccatggagaaaatcaatgaaaca
atttctaaagcaaagaatgaagtgaaagatcttatcagggctgctcaggaaaagcagctg
gagcctgaacctggtcgaacaatgatggaatcatttgaaaacagagtaaaccaggtgtta
aacaaagctcgtgatgatgctgggagtagtgcccagaagagtttgtcagagagtaacaat
ctcaaggcaatggtaactgctgggtcaaagggtagtttcattaatatctcccaaatgact
gcttgtgttggacaacagaacgttgaaggtaagcggatcccatttggcttcatagatcga
acattaccccatttcaccaaggatgactatgggcctgaaagtcgtggatttgtggaaaac
tcatatttgcgtgggttgaccccacaagagttctttttccatgctatgggtggtagggaa
ggtttgattgatactgcagtcaagacttctgaaactgggtatatccaaaggcgacttgtg
aaggctatggaggatataatggtcaaatatgatgggactgtcaggaactcattgggggat
gttattcagtttctttatggagaagatggtatggatgctgtttggattgaaacacagaag
ttggactccctaaaaatgaagaaatctgagtttaataaggttttcagatatgagattgat
gatgaaagctggaaccccagttatatgttacctgaacatgtcgaagatctgaaaaccatt
cgggagttccgcaatgtctttgatgcagaagttcagaaattggaagcagataggtaccag
cttggcacagagattgccaccacgggtgataactcctggcctatgccggtgaacctcaag
aggcttatatggaatgcacagaagacatttaaggttgacttgcgaaggccatctgatatg
caccctatggagattgtggaggctgttgataaacttcaggagaggctgaaggttgttcct
ggtgatgattttctgagtatggaagcccagaaaaatgccacccttttttttaacatcttg
ctgcgcagtacatttgccagtaaaagggtgttgaaagaatacaggcttacacgtgaagca
tttgagtgggttattggtgagatagaatctcgtttcttacagtcactagttgccccagga
gaaatgattgggtgtgttgctgctcagtctattggtgagcctgctactcaaatgactttg
aacaccttccattatgctggtgtgagtgctaagaatgtcactctgggtgtacccaggctg
agggaaattattaatgttgctaagaaaattaaaactccttcattgtctgtttacctgaag
cctgaagtgaacaagacaaaagagagggcgaagaatgttcaatgtgctctggaatacacc
actctgcggagtgtaacccaagctactgaagtttggtatgatccagacccaatgagcacc
ataattgaagaggatattgattttgtcaagtcatactatgaaatgccagatgaagaggtt
gccccagagaaaatttcgccttggcttcttcgcattgagttaaatcgtgagatgatggtg
gataaaaagctgagtatggccgacatagcagagaagataaatcttgaatttgatgatgat
ttaacttgtatatttaatgatgacaatgctgagaagctgattctccgcatccgtataatg
aatgatgaggctccaaagggtgaattgcaggatgaatctgccgaggatgatgttttcctt
aaaaagattgagagtaacatgctgactgaaatggcccttcgtggtatcccagatatcaat
aaagtttttatcaagtcagggaaagtaaataaatttgatgagaacgaagggtttaagcca
gaagttgagtggatgctggatactgaaggcgttaatcttttagctgttatgtgtcatgag
gatgttgatgccacacggactacaagtaaccacttgattgaagtgattgaagttttggga
atcgaggctgttcgtcgagcacttctagacgagttacgagtggttatatcttttgatggg
tcttatgtgaattataggcacctggccatcctctgtgatacaatgacttatcggggtcac
ttgatggctatcacccgtcatggtattaaccggaatgatactggaccaatgatgagatgc
tcatttgaggaaaccgtggacattcttctcgatgcggctgtttatgctgaaacagatcat
cttaggggtgttaccgagaatattatgctaggtcagcttgctccaatcggcaccggtgat
tgtgccttgtatctgaatgatcagatgttgcagcaagccattgaaatcaatctccctagt
tatatggaaggtttagattttggcatgacaccttcccgttcaccgattactggaactcca
tataatgagggcatgatgtctccaagctatttgctgagcccaaatattcgttcttcgcct
atttcagatgctcaattttctccttatgtcggtggaatggccttctcacctacttcatcc
ccaggctacagtccatcctctcctggctacagccccacctctcctggctatagccccacc
tctcctggctacagccccacttcaccaggttacagccccacttccccaacatacagcccc
agctctcctggttacagtccaaccagtcctgcatattctcctacaagtccatcatattcc
cctacctcacccagctatagtccgacctcaccgagctatagcccgacctcacccagttac
agcccgacctctcccagttacagcccttcttctcccagttacagccctacttctccggcc
tatagtcctacttctccagcttatagccccacatctcctgcatacagtcccacctcgcca
tcatacagcccgacatcgccatcgtacagcccgacctcgccatcttacagcccaacctct
ccatcatacagcccgacctctccatcatacagtccgacctctcctgcatatagcccaaca
tctccaggttacagtccgacctcaccaagttacagtccgacatctccaagctacagtcct
acatctccaagttacaatcccccatctgcaaaatacagtccatcattggcgtactcccca
agtagcccaaggctgtcaccgtccagtccatatagtcagtcttctccaaattacagccca
acgtcaccatcttattcgccaacttctccatcttattccccaccaagccccacatacagt
cctagcagtccatacaattctggtgtcaccccagactacagccccagttctcctcaatac
agtccaagtgcgggttactctcctactgcgccaggctattcaccttcatctaccagccaa
tacaccccacaaggtgacaaagatgaagggagcacccgctga
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integrated database retrieval system
