Micromonas commoda: MICPUN_65110
Help
Entry
MICPUN_65110 CDS
T02695
Name
(RefSeq) predicted protein
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mis
Micromonas commoda
Pathway
mis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MICPUN_65110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_65110
Enzymes [BR:
mis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MICPUN_65110
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
MICPUN_65110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
BUD22
Motif
Other DBs
NCBI-GeneID:
8248491
NCBI-ProteinID:
XP_002505800
JGI:
MicpuN3_65110
UniProt:
C1EFA8
LinkDB
All DBs
Position
13:complement(join(<709074..709928,710058..710304,710371..710932,711131..712705,712820..713737,713843..714057,714100..>714576))
Genome browser
AA seq
1616 aa
AA seq
DB search
IVSTSFSFYDAEEARRISVKRISNPVLFDALNNPVQDGLYDPALGPIDKKGSCATCRLSA
MHCPGHFGHIELAVPVYNPLTFGTVVRLLRGMCLHCHRFKMGADRVAAYSRKMQLIRAGD
LNAAAEISTVGVSKQVREAIAELEEDGLGRDVADVDTTADRVVWTTNSMVESRDLIRNFL
ASVPAKCENCGCCSPKVTPEGANKIYRQALTNKQREANASLGIDLDGELADSDDDGSGSD
DSSDSSVSDSDSDSGGSDEKKSEKKKVRVDNATQQAGKQVFITPIEARALLKRLWAREYD
FCSMVWAAAPPTHGLTKGAKDPIVNRSDPARFFMQTVLVTPCKLRPPSRMGDMMFEHPQN
THLNAIIQANLTLAELFRKPPTVPEPPEVRAQRAVRAWLTLQSGVNKLIDSSREGGEAGG
PGIRQQLEKKQGLFRMNMMGKRVNYAARSVIMPDPYLRTSEIGVPPVFAKKLTFPEHVTE
HNVDLMRKLVENGPEIHPGANAIEDERGRVIHLDRFTAEKRAAIAKTLLAAPAPVSGSRP
LAKKVYRHLRDGDVLLVNRQPTLHKPGIMAHTAKVLPGQRTIRMHYANCKTYNADFDGDE
MNLHFPQDHLARAEAYEIVRADQQYTVPTDGSPLRGLIQDHVVAGVLLTKRDTFLDREEM
RQALYSALVDYADEDKGGGSARGHSITVPPPAIVHPRELWTGKQVISAVLDHITHGRPDM
TMSHGCKVPANYWGGENSGEGEFILRKNYVCCGIVDKNTFGNKGLVHAVAELHGRVLAGD
LLSVLSRLLTVWLQKWGMTCGLDDLILTPEAEVGRAEELAKAAAACRSAAATFAEADENV
PDAALQQQIAARLAEREGAEAILDMRSSGALNKITSAAVTKCLPHGTKKPFPKNCLSLMT
QSGAKGSMVNFSQIAACLGQQELEGRRVPRMISGKTLPCFQPFDLSQRAGGYIEDRFFSG
LRPQEYFFHCMAGREGLVDTAVKTARSGYLQRCMIKNLETLRVHYDHTVRDCDGSVVQFQ
YGEDGADVTKSSYASDFQFLADNAELVKANLREAEAGRAEGKGASIKADLKSVKGVVERK
PPEKKQSLVAQAGVTREEFKRLMNYRYLNQLAAPGEAVGCIAGQSVGEPSTQMTLNTFHF
AGRGEANVTLGIPRLRELLMAAAKKLATPVMTLPLLPHAQTMEQAENLARRLRRVRLAEL
IRRLSVTENPCGTSHSGTGKLARTYTVSMQLRGPKTGEDDDDDDASADDMAKSFRRDFAK
RLYGRIKLELRRVGANAGRIEVSKAERADRGATGGGGDDDDDDAERAVKSKKDDKEDGED
ASDDEDEEDEEAAEDGDGDAMDEESDSDSDSDSGSDSGSDSGSGSGSEDDDGDDTSGARE
EPKKKPKAPAKPRASSRSVGGDLLESLEDIVETVNVDRETRTCVLTLSLKLTAPQLLVLE
LCEKVASETIVRSVPGIDKTYVVGKLPSDDPTGKDPLRIQTDGVNFAAAWANDDLVDCTK
LTTNDVYAMLQTYGVEAARQTLVQEVRNVFGVYGIGVDARHLTLIADFMMQQGNYRPCSR
AGIETSPSPFLKMSYETAAAFLVDATMKGAEDTLESPSSRIVMGRVPDLGTGSFGL
NT seq
4849 nt
NT seq
+upstream
nt +downstream
nt
atcgtgtccacgtccttctccttttacgacgccgaggaggcgaggcgcatcagcgtcaag
cgcatcagcaaccccgtcctcttcgacgcgctcaacaacccggttcaggacggactgtac
gatcccgcgctcggacccatcgacaagaaggggtcttgcgccacgtgcaggcttagcgcc
atgcactgcccgggccacttcggccacatcgagctcgccgtcccggtctacaaccccctg
accttcggcaccgtggtcaggctgctcagggggatgtgcctccactgccaccgattcaag
atgggcgcggacagggtcgcggcgtactcgcgcaagatgcagctcatccgcgccggcgac
ctgaacgccgcggcggagatatccaccgtcggcgtctccaagcaggtccgcgaggccatc
gccgagctcgaggaggacggactcggtagggacgtggcggacgtggacacgacggctgac
cgggtcgtgtggaccacgaactccatggtggagtcccgcgatctgatccgaaatttcctc
gcctccgtgccggccaagtgcgagaactgcgggtgctgctcccccaaggtgacccccgag
ggggcgaacaagatttaccgccaggcgctgaccaacaagcagcgcgaggccaacgcctcg
ctcgggatcgacctggacggcgaactcgcggactccgacgacgacggctctggctcggac
gactcctccgactcctctgtctcggacagcgactccgactccggcggctcggacgaaaag
aagagcgagaagaagaaggtgcgcgtggacaacgcgacgcagcaggcgggtaagcaggtc
ttcatcaccccgatcgaggctcgcgcgctcctcaagaggctgtgggcgagagagtacgac
ttctgctcgatggtctgggccgcggcgcctcccacgcacgggctgaccaagggcgcgaag
gatcccatcgtgaaccgatccgatcccgcccggttcttcatgcagacggtgctcgtgacc
ccgtgcaagcttcgaccgccgagcaggatgggagacatgatgttcgaacacccgcagaac
acgcacctcaacgcgattatccaggcgaacctgaccctggcggagctcttccgaaagcct
ccgacggtcccggagccccccgaggttcgcgcgcagcgcgcggtccgcgcgtggctcacc
ctccagagcggcgtgaacaagctgatcgactcgtccagggagggcggcgaggcgggcggt
ccggggatccggcagcagctggagaagaagcagggcctctttcgcatgaacatgatgggc
aagcgcgtgaattacgccgcccgctcggtgatcatgcccgatccgtaccttcgaacgtcc
gagatcggcgttcctcccgtgttcgcgaagaagctcacgtttccggagcacgtcaccgaa
cacaacgtggacctgatgcgcaagctggttgaaaacggcccggagattcaccccggggct
aacgccatcgaggacgagcgcggccgcgtcatccacctcgacaggttcaccgcggagaag
cgcgcggcgatcgccaagactctgctcgcggcgcccgcgcccgtcagcgggtcccgcccc
ctcgccaagaaggtctaccgccacctccgcgacggcgacgtgctgctggtgaaccgtcag
cccacgctgcacaagccgggtatcatggcgcacaccgcgaaggtgttacccggccagagg
accatccgaatgcactacgccaactgcaagacgtacaatgccgatttcgacggcgacgag
atgaacctccacttcccccaggaccacctcgcgagggccgaggcgtacgagatcgtgcga
gcggaccagcagtacacggtacccacggacggctccccactgcgcgggctgatccaggac
cacgtcgtggccggtgttttgctgacgaaacgcgacacgtttctcgaccgggaggagatg
cggcaggcgctgtattcggcgcttgtcgattacgccgacgaggacaaagggggggggtcc
gccagggggcactcgatcaccgtgcccccgccggcgatcgtgcatccgagggagctgtgg
acgggcaagcaggtgatatcggcggtgctcgatcacatcacccacggccgaccggatatg
acgatgagccacgggtgcaaggtgcccgccaactactggggcggcgagaactccggcgag
ggcgagtttatccttcgcaaaaactacgtgtgctgcggcatcgtggacaagaacacgttc
ggcaacaaggggctcgtgcacgccgtcgccgagctgcacgggcgcgtgctcgcgggggac
ctgctgtccgtgttgtcccggctgctcaccgtgtggctgcaaaagtggggcatgacgtgc
ggactcgacgatctcatcctcacgcccgaggcggaggtgggccgagccgaggagctcgcc
aaggcggccgccgcgtgcagaagcgcggcggccacgttcgccgaggctgacgagaacgtc
ccggacgcggcgctccaacagcagatcgccgctaggctcgccgagcgagagggcgcggag
gctatcctcgacatgcggtcgtcgggcgcgctgaacaagatcacgtcagccgcggtgacc
aagtgcctgccgcacggaaccaagaagccgttcccgaagaactgcctgtcgttgatgacg
cagtcgggggcgaagggttccatggtgaacttctcgcagatcgcggcgtgcttggggcag
caggagctggagggccgccgagtgccccgcatgatttccggcaagactctgccgtgtttc
cagccctttgacctgtcccagcgcgcgggcgggtacatcgaggaccgattcttctcaggt
ctcaggccccaggagtacttcttccactgcatggcggggcgcgagggactcgtcgacacc
gcggtcaagacggctcgttcggggtacctgcagcggtgcatgatcaagaacctggagacg
cttagggtgcactacgatcacaccgtccgcgactgcgacggatccgtggtgcagttccag
tacggcgaggacggcgcggacgtgaccaagagttcgtacgcgagcgatttccagtttctc
gcggacaacgccgagctcgtcaaggccaacttgcgggaagcggaggctggcagggccgag
ggcaaaggggcgagcatcaaggctgacctcaagtccgtcaagggggtggtcgagaggaag
cctccggagaagaagcagtccctcgtcgcgcaggctggcgtgacccgcgaggagttcaag
cgcctgatgaactaccgctacctcaaccagctcgccgcgccgggcgaggcggtcggttgc
atcgcgggccaatccgtcggcgaaccgtccacgcagatgaccctcaacaccttccacttc
gccggccgcggcgaggccaacgtgacgctcggaatcccccgccttcgcgagctcctcatg
gccgccgcgaagaagctcgcgacgccggtcatgaccctgcccctgctcccgcacgcccag
acgatggagcaggcggagaacctcgccaggcggcttcgcagggttcgcctcgcggaactc
atccggagactctcggtaaccgaaaacccgtgcgggacgtcgcactcgggcaccggtaag
ctcgcacggacgtacacggtgtcgatgcagctccgcgggccgaagaccggcgaggacgac
gacgacgacgacgccagcgccgacgatatggccaaatcgttcaggagggacttcgcgaag
cggctgtacggccggatcaagctggagcttcgacgcgtgggcgccaacgcggggaggatc
gaggtttccaaggctgagagggccgaccgaggggcgaccggcggcggcggcgacgacgac
gacgacgacgccgagagggcggtcaagtcgaagaaggacgacaaggaggacggcgaggac
gcctccgacgacgaggacgaggaggacgaagaggccgccgaggacggcgacggcgacgcc
atggacgaggaatccgactccgactccgactccgactcgggctccgactcgggctcggac
tcgggctcgggctcgggctccgaggatgacgacggtgacgacacatccggcgcccgggag
gagcccaaaaagaagccaaaggcgccggccaagccccgcgcctcctcgcgttccgtcggc
ggggacctcctcgagtccctcgaggacatcgtggagaccgtcaacgtcgatcgcgagacc
cgcacgtgcgtcctgacgctgtccctcaagctcaccgcgccgcagcttctcgtcctcgag
ctctgcgaaaaggttgcgtcggagacaatcgtcaggtccgtccccggcatcgacaagacg
tacgtcgtcgggaaactgccaagcgacgacccaacgggcaaggacccgctgcggatccag
acggacggcgtcaacttcgccgccgcgtgggccaacgacgacctcgtggactgcaccaag
ctcaccaccaacgacgtctacgcgatgttacaaacgtacggcgtggaagccgcgaggcag
acgctggtgcaggaggtgaggaacgtgttcggggtgtacggcatcggagtggacgccagg
cacctgaccctcatcgccgatttcatgatgcagcagggcaactaccgcccgtgcagccgc
gcgggcatcgagacgtccccttcgccgtttctcaagatgtcctacgagacggcggcggcg
tttttggtcgacgcgacgatgaagggtgccgaggacacgctcgagtctccgagctccagg
atcgtcatgggacgggtcccggacctcgggaccgggtcgttcgggctga
DBGET
integrated database retrieval system
