Micromonas commoda: MICPUN_93824
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Entry
MICPUN_93824 CDS
T02695
Name
(RefSeq) mRNA cleavage and polyadenylation factor complex
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mis
Micromonas commoda
Pathway
mis03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
MICPUN_93824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_93824
Enzymes [BR:
mis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
MICPUN_93824
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
MICPUN_93824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
8242335
NCBI-ProteinID:
XP_002501146
JGI:
MicpuN3_93824
UniProt:
C1E2U3
LinkDB
All DBs
Position
3:complement(1528283..1529614)
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AA seq
443 aa
AA seq
DB search
MGDDAPNAGTQTHYLNKEEEFRVEVKIGTSVKVTLTDGTAEIFGAELPKGTPVTLPGGKH
AVFSWHGATIDVLGATELEYVARDTPMTQYLNLDGVLEERRKAAAAAGAAGDDGFASDGP
RVALVGPTDVGKSSIAKILTNYAVRKQWAPLFVDLDLGQGGITCPATIGAVPVDRPIDAE
EGVPLEMPLVYFAGDTSPGNNPDLYRYLVERMAAMLDARHASNPAARAAGVVINTMGWVE
GQGYKLLLHALDALKVDNVVVVGQERLHSELTRDFRGKRVGGDVPGEGTPVRVWKLNKSG
GVVERSPEFRRRCRDQKIREYFYGAPGAELQPHSQTLPFGQVSIFKVGGGPRAPATALPI
GQQSSSDPLRVTTVAPSMSLLNSVLAVSHGRSNADLLSSNVAGFIFVTEVDMRNGRFTFV
SPSAGELPSRNLLAGSLKWIEMP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacgacgcgcccaacgccggcacccagacgcactacctgaacaaggaggaggag
ttcagggtcgaggtcaagatcggcaccagcgtcaaggtcaccctcaccgacggcaccgcc
gagatcttcggcgcggagctcccgaagggcacccccgtgacgctgccgggcggcaaacac
gccgtcttctcgtggcacggcgccacgatcgacgtgctcggcgccaccgagctcgagtac
gtcgcgagggacacgccgatgacgcagtacctcaacctcgacggcgtcctcgaggagagg
cgcaaggcggccgccgccgcgggcgccgcgggcgacgacggcttcgcctctgacggcccg
cgagtcgcgctcgtcggaccaaccgacgtgggaaaatcctccatcgcgaagatcttgacc
aactacgccgttcgcaagcagtgggcgccgctgttcgtggacctggacctcggccagggc
gggatcacgtgccccgccacgatcggcgccgtgcccgtggacaggccgatagacgccgag
gagggggtgccgctcgagatgccgctggtgtatttcgccggtgacacgagcccggggaac
aatccggacctgtacaggtacctggtggagaggatggcggcgatgctggacgctcggcac
gcgtccaaccccgccgcgagagccgcgggcgtggtgatcaacaccatggggtgggtcgag
gggcaagggtacaagctgctgctgcacgctctcgacgcgctgaaggtggacaacgtcgtc
gtcgtcggccaggagcgtctgcactcggagctgacgcgggatttccggggcaaaagggtc
ggaggggacgtgccgggcgagggaacgcccgtgagggtctggaagctcaacaagtccggc
ggcgtggtggagaggtctccggagtttcgccggaggtgcagggaccagaagattcgcgag
tacttctacggagccccgggcgccgagctgcagccgcactcgcagacgctgcccttcggc
caggtgtccatcttcaaagtcggcggaggaccgagagcccccgcgacggcgcttcccatc
ggccagcagagcagcagcgacccgctgagggtcaccaccgtggcgccgtccatgtcgctt
ctcaactcggtgctcgcggtttcgcacggcaggagcaacgccgacttgctgtcttccaac
gtcgcgggtttcatcttcgtcacggaggttgacatgcggaacgggcggttcacgttcgtg
tcgccgagcgcgggggagctgccgtcgaggaacctgctcgcgggatcgctcaagtggata
gagatgccgtga
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