Methylomagnum ishizawai: MishRS11D_41000
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Entry
MishRS11D_41000 CDS
T07434
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
misz
Methylomagnum ishizawai
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
misz03009
]
MishRS11D_41000 (rimO)
Enzymes [BR:
misz01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
MishRS11D_41000 (rimO)
Ribosome biogenesis [BR:
misz03009
]
Prokaryotic type
ribosomal protein modification factors
MishRS11D_41000 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
PrmA
Motif
Other DBs
NCBI-ProteinID:
BBL77002
LinkDB
All DBs
Position
4573621..4574934
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AA seq
437 aa
AA seq
DB search
MKTPRIGFVSLGCPKALVDSERILTQLRAEGYELSPTYQDADLVVVNTCGFIDAAVEESL
DAIGEALAENGKVIVTGCLGERADEIRARHPQVLGITGAHAYEAVVGTVHEHLPPPHPPF
VDLVPPEGIKLTPRHYAYLKISEGCNHRCSFCIIPSLRGDLASRPIGEVMGEAERLVAAG
VKELLVVSQDTSAYGVDLKYRTDFWGGKPLKTRFHDLAQALGGLGVWVRLHYVYPYPHVD
EVIPLMAEGKILPYLDIPFQHANPRILRLMKRPAAAEDVLMRIERWRGLCPDLSLRSTFI
VGFPGETEEEFEELLDFLEEAQLDRVGGFAYSPVEGAAANTLPDPVPEAVKQDRLARFME
VQERISAERLQQRVGGRETVLIDEVVEEGAVARSRADAPEIDGQVFIDGATQLKVGEFVE
VVIEEADEHDMWAHLDG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaccccgcatcggattcgtcagcctcggttgccccaaagccctggtcgatagc
gaacgcatcctcacccagctccgcgccgagggctacgagctttcgcccacctatcaagac
gccgacctggtggtggtcaatacctgcggtttcatcgacgccgccgtcgaggaatccttg
gacgccatcggcgaagccctggccgagaacggcaaggtcatcgtcaccggctgcctgggc
gagcgggccgacgaaatccgcgcccgccatccgcaagtcctcggcatcaccggagcccat
gcctacgaggccgtggtcgggaccgtgcatgagcatctgccgccgccgcaccctcccttc
gtcgatctggtgccgccggagggcatcaagctcaccccgcgccattacgcctatctcaag
atttccgaaggctgcaaccaccgctgctcgttctgcatcatcccgtcattgcgcggcgat
ctggccagccgccccatcggcgaggtgatgggcgaggccgaacgcctggtcgccgccggg
gtgaaggaattgctggtggtgtcgcaggacaccagcgcctatggcgtcgatctgaaatac
cgcaccgacttctggggcggcaagccgctcaagacccgcttccacgatctcgcccaggcg
ctgggtggattgggcgtgtgggtgcggctgcattatgtctacccttacccgcatgtggac
gaggtgattccgctgatggccgaggggaaaatcctgccctatctggatatcccgttccag
cacgccaacccgcgtatcctcaggctgatgaaacgcccggcggcggcggaagatgtgctg
atgcggatcgagcgctggcgcggcctgtgcccggacctgagcttgcgtagcactttcatc
gtcggctttcccggcgagaccgaggaggaattcgaggaattgctggatttcctggaggaa
gcccaactcgaccgggtgggcggcttcgcctattcgccggtggagggggccgccgccaac
accttgcccgacccggtgccggaagcggtcaagcaggaccggctggcccgcttcatggaa
gtgcaggagcgcatcagcgccgagcgcctacagcaaagggtcgggggccgggaaaccgtg
ttgatcgacgaggtggtggaagaaggcgcggtcgcccgcagccgggccgacgcgccggaa
atcgatgggcaggtgttcatcgatggcgcgacccagctcaaggtcggcgaattcgtcgag
gtggtgatcgaggaggccgacgaacacgatatgtgggcgcatctcgacggctag
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