Manis javanica (Malayan pangolin): 108406494
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Entry
108406494 CDS
T06054
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mjv
Manis javanica (Malayan pangolin)
Pathway
mjv03020
RNA polymerase
mjv03420
Nucleotide excision repair
mjv05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
mjv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108406494 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
108406494 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
108406494 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjv03021
]
108406494 (POLR2A)
03400 DNA repair and recombination proteins [BR:
mjv03400
]
108406494 (POLR2A)
Enzymes [BR:
mjv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108406494 (POLR2A)
Transcription machinery [BR:
mjv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108406494 (POLR2A)
DNA repair and recombination proteins [BR:
mjv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108406494 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
108406494
NCBI-ProteinID:
XP_017530707
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
ANNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
DDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVRELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccttccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtcccgatgaactgaagcgaatgtctgtgacagaaggtggt
atcaaatacccagagacgacggagggaggccgccccaagcttggggggctgatggatccg
aggcagggggtgattgagcggactggccgctgtcagacctgcgcaggaaacatgacagag
tgtcccggccactttggccacattgaactcgccaaacctgtgtttcacgtgggcttcctg
gtgaagacgatgaaagttttgcgctgtgtctgcttcttctgctccaaattgcttgtggac
gctaacaacccaaagatcaaggacattttggctaagtccaaggggcagcccaagaagcgg
ctcacacacgtctacgacctttgcaagggcaaaaacatctgcgagggcggggaggagatg
gacaacaagtttggtgtggagcagcctgagggcgatgaggatttgaccaaagaaaagggc
cacggtggctgtgggcgctaccagcccaggatccggcgctctggcctggagctgtatgca
gagtggaagcatgtcaatgaggactcccaggagaagaagatcctgctgagtcctgagcga
gtgcatgagatcttcaagcgcatctcagatgaggagtgttttgtactgggcatggagccg
cgctatgcccggcctgagtggatgattgtcaccgtgctgcccgtgcccccgctctccgtg
cggcctgctgttgttatgcagggctctgcccgcaaccaggatgatctgactcacaaactg
gccgacattgtgaagatcaacaatcagcttcggcgcaatgagcagaatggcgcggcggcc
catgtcattgcagaggatgtgaagcttctccagttccatgtggccaccatggtggacaat
gagctgcctggcttgccacgagccatgcaaaaatctgggcgtcctctgaagtccctgaag
cagcgattgaagggcaaggaaggccgggtacgagggaacctgatgggcaagcgagtggac
ttctcggcacgcactgtcatcacccccgaccccaacctctccattgaccaggttggcgtg
cctcgttccattgccgccaacatgacctttgcggagattgtcacccccttcaacattgac
agacttcaggaactagtacgcagggggaacagccagtaccccggggccaagtacatcatc
cgagacaatggcgatcgcatcgacctgcgtttccaccccaaacccagtgaccttcacctg
cagactggctataaggtggaacggcacatgtgcgacggggacattgttatcttcaaccgg
cagccaactttgcacaagatgtccatgatggggcatcgggtccgcatcctgccctggtct
acttttcgcttaaatctgagtgtgacaactccgtacaacgctgacttcgatggggatgag
atgaacttgcacctgccacagtctctggagactcgggcagagatccaagagctcgccatg
gtgccgcggatgattgtcacgccccagagcaatcgccctgtcatgggcattgtgcaggac
acactcactgcagtgcgcaaattcactaagagagacgtcttcctggagcggggtgaagtt
atgaacctcctgatgttcctgtctacgtgggatgggaaggtcccacagccagccatcctg
aagccccggcccctgtggacaggcaaacagatcttttcccttatcataccaggccacatc
aactgtatccgcacccatagcacccatcccgatgatgaggacagtggcccttataagcac
atctcccctggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtctttggggacatcagctggctccctggtccacatctcttacctagagatg
ggtcatgatatcactcgccttttctattccaacattcagactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggactccatcgctgattccaagacttaccag
gacattcaaaacactattaagaaggccaagcaggatgtaatagaggtcattgagaaggct
cataacaatgagctagagcccaccccagggaacactctgcggcagacgtttgagaaccag
gtgaaccgcattctcaatgatgcccgagacaagactggctcctctgcccagaaatccctg
tctgaatacaacaactttaagtctatggttgtgtctggggctaaaggttccaagatcaac
atctctcaggtcattgctgttgtcgggcagcagaatgtggagggcaagcggatcccattt
gggttcaagcaccggactctgccccatttcatcaaggatgactatgggcccgagagtcgt
ggctttgtggagaattcctacctggccggcctcacacccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcattgacacagctgtcaagactgctgagactggatatatc
cagcggcgactgattaagtccatggagtcggtaatggtgaagtatgatgcgactgtgcgg
aactcaatcaaccaggtggtgcagctgcgctacggcgaggatggcctggcgggcgagagt
gttgagttccagaacctggctacccttaagccttccaataaggcttttgagaagaagttc
cgctttgattataccaatgagagggctctgcgccgcactctgcaggaggatttggtgaag
gacgtgctgagcaatgcacacattcagaatgagctagagcgagaatttgagcggatgcga
gatgatcgggaggtgctcagggtcatcttcccaactggcgacagtaaggttgtcctgccc
tgtaacctgctgcgcatgatctggaacgcccagaaaatcttccacatcaaccctcgcctt
ccctccgacctacaccccatcaaggtggtagagggagtcagggaattgagcaagaagctg
gtgattgtgaatggggatgacccgctgagccggcaggcccaagagaatgccacgctgctc
ttcaacatccacctgcggtccacgctctgttcccgccgcatggctgaggagttccggctc
agtggcgaagcctttgactggctgctcggagagattgagtccaagttcaaccaagctatt
gcccatcctggggaaatggtgggagctctggccgcgcagtcccttggtgaacctgccacc
cagatgaccttgaacaccttccactatgctggtgtgtcagccaagaatgtgactttgggt
gtgccccgactcaaggagctcatcaacatttccaagaagccaaagaccccctcactgact
gtcttccttctgggccagtctgctcgagatgctgagagagccaaggacattctgtgccgc
ttggaacacacaacattgagaaaggtgactgccaacacagccatttactatgaccccaac
ccccagagcacagtggtggcagaagaccaggaatgggtgaatgtctactatgagatgcct
gacttcgacgtagcccgaatctccccctggcttttgcgggtggagctagaccggaagcac
atgactgaccggaagttgaccatggagcagattgctgaaaagatcaatgctggctttggc
gatgacctgaactgcatctttaatgatgataatgcagagaagctcgtgctccgcatccgc
atcatgaacagtgatgagaacaagatgcaagaggaagaagaggtggtggacaagatggat
gatgacgttttcctgcgctgcatcgagtccaacatgctgacagatatgaccctgcagggt
attgagcagatcagcaaggtgtacatgcacttgccacagacggacaacaagaagaagatc
attatcacagaggatggggaattcaaggccctgcaggagtggatcctggaaacagatggt
gtgagcttgatgcgggtgctgagtgagaaagatgtggaccctgtgcgcactacatccaat
gacatagtggagatcttcacagtgctgggcattgaagctgtgaggaaggccttggagcgg
gagctctaccacgtcatctcctttgacggttcctatgttaattaccggcacttggctctc
ctgtgtgacaccatgacctgccgtggccacttgatggccatcacccgacacggagtcaac
cgccaggatactggacctcttatgaagtgctcctttgaggagacggtggatgtgctgatg
gaagcagctgcacacggagagagcgaccccatgaagggggtgtcagagaatatcatgctg
ggccagctagctccagctggcactggctgttttgacctcctactggatgcagagaagtgc
aagtatggcatggagatccccaccaatatccccggtttgggggctgctggacccaccggc
atgttctttggctcagctcccagtcctatgggaggaatttctccagccatgacaccctgg
aaccagggtgcaaccccagcctatggtgcctggtcccctagtgttgggagtggaatgacc
ccaggggcagctggcttctctcccagtgctgcttcagatgccagcggcttcagccctggt
tactcccctgcctggtctcccaccccaggctccccaggctccccaggaccctcaagccca
tacatcccatcaccaggtggtgccatgtctcccagctactcaccgacatcccctgcctac
gagcctcgctcccctgggggctacacaccccagagtccctcttactctcccacctcccct
tcctactcccctacttctccatcctattctccaaccagtcccaactacagtcccacatca
cccagctactccccgacctctcccagctactctccaacctctcccagctactcccccacc
tctcccagttactcacccacctcgcccagctactctccaacttcccccagctactcgccc
acatcccccagctactcgccaacctctcccagctactcgccaacctctcccagctactcg
ccaacctctcccagctactccccaacctcacccagctattctcccacctcacccagctac
tccccaacatctccaagctattctccaacatcaccaagctactcacctacttccccaagt
tattcacccaccagtcctaactattctccaaccagtcctaattataccccaacatcaccc
agctatagcccaacgtcacccagctactcacctactagtcccaactacacaccaacaagc
cctaactatagcccaacctctccaagctattctccaacttcacccagctactccccaacc
tcaccaagctactccccttcgagcccacgatacacaccacagtctccaacctacaccccg
agctcccccagctacagcccgagctcccccagctacagccccacctcacctaagtacacc
cctaccagcccctcctatagtcccagctcaccagagtacaccccaacctctcccaagtac
tcacctaccagcccaaagtattcacccacctcccccaagtactctccaaccagccctacc
tactcgcccaccaccccaaaatactcaccaacatctcctacttactcaccaacctctcca
gtctataccccaacctcccccaagtattcacctactagccccacctactcacccacctcc
cccaagtactcacccactagccccacctactcacccacctcccccaagggctctacctac
tctcccacttcccctggctactcgcccaccagccccacttacagcctcaccagcccagcc
atcagccctgatgacagtgatgaagagaactga
DBGET
integrated database retrieval system
