Mirounga leonina (Southern elephant seal): 118008150
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Entry
118008150 CDS
T07472
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx01524
Platinum drug resistance
mlx03430
Mismatch repair
mlx05200
Pathways in cancer
mlx05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118008150 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
118008150 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
118008150 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
118008150 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlx03400
]
118008150 (MSH6)
DNA repair and recombination proteins [BR:
mlx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118008150 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
Motif
Other DBs
NCBI-GeneID:
118008150
NCBI-ProteinID:
XP_034857503
LinkDB
All DBs
Position
Unknown
AA seq
1362 aa
AA seq
DB search
MSRQSTLYSFFPKSPALNNANKASVRASGVGGGAAAATGASRSPGGDAAWSEAEPGPGPL
AGSASPREARNINGGLRRSAAPAVPASSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTF
IREKGKSVRVHVQFFDDSPTRGWVSRRLLKPYTGSKSKEVQKGGHFYSSKPEILRAMQRA
DEALSKDKIERLELAVCDEPSEPEEEEMEVGATYSSGKSEEENEIESEEEVRPKVQGSRR
SSRQIKKRRVISDSESDVGGSDVEFKPDAKEEGSSDEISSGVGDSDSEGLDSPVKVASKR
RKMVTGNGSLKRKSSRKEMPLATKRSPGISSDTKSALTAFSAPQNSESQAHVGGGCDDSS
RPTLWYHETLEWLKEEKRRDLHRRRPDHPDFDASTLFVPEDFLNSCTPGMRKWWQIKSQN
FDLVIFYKVGKFYELYHMDALTGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGTQTYSVLEGDPSENYSKYLL
SLKEKEEDSSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGN
LSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLRTLLEEGYFKEKLNEDSGVMLPQVLK
GMTSESDSLGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDMVSAT
RPGAVFAKANQRMVLDAVTLSNLEIFTNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA
PLCSPYAINDRLDAIEDLMVVPDKISDVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDS
RAIMYEETTYSKKKIIDFLSALEGFKVVCKIIEIMEEVVDDFKSKILKQVITLQTKNPEG
RFPDLTIELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRS
RIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLIN
AEERRDVSLKDCMRRLFFNFDKNYKDWQSAVECIAILDVLLCLANYSRGGDGPMCRPVVL
LPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEEENGKAYCVLVTGPNMG
GKSTLMRQAGLLAVMAQVGCYIPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETA
SILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFSTHYHSLVEDYSQ
NVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANIPEEVIQKGHR
KAREFEKMTQSLRLFREVCLASERSTIDAEAVPKLLTLIKEL
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacagagcacgctgtacagcttcttccccaagtctccagcgctgaataatgct
aataaggcctcggtcagggcctcaggtgtaggcggcggcgccgccgcagccaccggggcc
tcccgttctcccggcggggatgcggcctggagcgaggccgagcctgggcctgggcccttg
gcaggctccgcgtcgccgcgggaagcgaggaacatcaatggagggctgcggagatctgcc
gcccctgcggtccccgccagttcttgtgacttctcaccaggtgatttggtttgggccaag
atggagggttacccctggtggccttgcctggtttacaaccacccttttgatggaacattc
atccgtgagaaagggaagtctgtccgagttcatgtacagttttttgatgacagcccaaca
aggggctgggttagcagaaggctattaaagccatatacaggttcaaaatcgaaggaagtg
caaaaaggaggtcatttttacagttcaaagcctgaaatactcagagcaatgcaacgtgca
gatgaagccttgagtaaagacaagattgagaggcttgaattggcagtgtgtgatgagccc
tcagaaccagaggaagaagagatggaggtaggtgcaacttactcatcaggtaagagtgaa
gaagaaaatgaaattgaaagcgaagaggaagtacggcctaaggtccaaggatctaggcga
agtagccgccaaataaaaaaacgaagggtcatatcagactctgagagtgacgttggtggc
tctgatgtggaattcaagccggatgctaaggaggaagggagcagtgatgaaataagcagt
ggagtgggggatagtgacagtgagggcctggacagtcctgtcaaagttgcttcaaagcgg
aggaaaatggtgactggaaatggttctctcaaaaggaaaagttcaaggaaggaaatgccc
ttggctaccaaacggtcacctggcatttcatcagacaccaagagtgctttgactgctttc
tctgcccctcaaaattctgaatctcaagcccacgttggtggaggatgtgatgatagtagt
cgccccactttgtggtatcatgaaactctagagtggcttaaggaggaaaagagaagagat
ctacacaggcggcgacccgatcaccctgattttgatgcatccacactctttgttcctgag
gatttccttaattcctgtactcctgggatgaggaagtggtggcagattaagtctcagaac
tttgatctggttatattttataaggtggggaagttttatgagctgtaccacatggatgct
cttactggcgtcaacgaactaggtctggtgttcatgaaaggcaactgggctcattctggt
ttccctgaaatagcatttggccgatactccgattctctggttcagaagggctataaggta
gcacgagtggaacagactgagacccccgaaatgatggaggcacgatgccggaagatggca
catatatctaagtatgacagagtggtgaggagggagatctgtagagtcattaccaagggt
acacagacctacagtgtattggaaggtgacccctctgagaactatagtaagtatcttctt
agcctcaaagaaaaagaggaagattcttctggccacactcgggtgtacggagtatgcttt
gttgatacctcactgggaaagtttttcataggtcagttttcagatgatcgccattgttcc
agatttaggactctagtggcacactatcctccagtacaagtcttgtttgagaaaggaaac
ctctcaacagaaacgaagatgattctgaagggttcattatcctcctctcttcaggaaggt
ctgataccaggctcccagttttgggatgcagccaaaactttgagaactctccttgaagaa
ggatattttaaggagaagttaaatgaggacagtggggtgatgttaccccaggtgcttaaa
ggtatgacctcagagtctgattctcttgggttgacaccaggagagaagagtgaattggcc
ctctctgctctaggtggttgtgtcttctacctcaaaaaatgccttattgatcaagagctt
ttatcaatggccaattttgaagaatacattcccttggattctgacatggtcagtgctaca
agacctggtgctgtgtttgctaaagccaatcaacgaatggtgctagatgctgtgacatta
agcaacttggagattttcacgaatggaacaaatggttctactgaagggaccctgctagaa
aagatcgatacttgccatacgccctttggtaagcggcttctaaagcagtggctttgtgcc
ccactctgtagcccttatgctatcaacgatcgtctagatgctatagaagacctcatggtt
gtgcctgacaaaatctctgatgtggtagaccttctgaagaagcttccagaccttgaaagg
ctgctgagtaaaattcataatgttgggtctcccctgaagagccagaaccacccagatagc
agggctatcatgtatgaagaaactacatacagcaaaaaaaagattattgattttctttct
gctctagaaggattcaaagtagtatgtaaaattatagagattatggaagaagtcgttgac
gactttaagtctaaaatccttaagcaggtcattactctacagacaaaaaatcctgagggt
cgttttccagatttgactatagaactgaaccgatgggatacagcctttgaccatgagaag
gctcgaaagactggactaattactcccaaagcgggatttgactctgattatgaccaagct
cttgctgacataagagaaaatgaacagagcctcctggaatacttggagaaacagcgcagt
cgaattggctgtaggaccattgtctactgggggatcggtaggaaccgttaccagttggaa
attccagagaatttcatcactcgtaatttgccagaagaatatgagctaaaatctaccaag
aaggggtgtaagcgatactggaccaaaactattgagaagaagttggctaatctgataaat
gctgaagaacggagagacgtatcattgaaggactgcatgcggcgactgttctttaacttt
gataaaaattacaaggactggcagtctgctgttgagtgcatcgcaatattggatgtctta
ctgtgcctggctaactacagtcgagggggtgatggccctatgtgtcgtccagtagttctg
ttgccagaagaaggcactcctcccttcttagaccttagaggatcacgtcatccctgcatt
acgaagactttttttggagatgactttatacctaatgacattctaataggctgtgaggaa
gaggaggaggaggaaaatggcaaagcttactgtgtgcttgtgactggacctaacatgggg
ggcaagtctacgctcatgagacaggctggcctattagctgtaatggcccaagtgggttgt
tacatacctgctgaagtgtgtaggctcacaccaattgatagagtatttactagacttggt
gcctccgacagaataatgtcaggtgaaagtacgttttttgttgaattgagtgaaactgcc
agtatacttacgcatgccacagcacattctctggtgcttgtggatgaattaggaagaggt
actgcaacatttgatggaacagcaatagcaaatgcggttgttaaagaacttgctgagaac
ataaagtgtcgtacattgttttctacccactaccattcattagtagaagattattctcaa
aatgttgcagtgcgcctgggccacatggcatgcatggtagaaaatgaatgtgaggatccc
agccaggagaccattaccttcctctataaattcattaagggagcttgtcctaaaagctat
ggctttaatgcagcgaggcttgctaatattccagaggaggttattcaaaagggacatagg
aaagcaagagaatttgagaagatgactcagtcactgcgattatttcgggaagtttgcctg
gctagtgaaaggtcgactatagatgctgaagctgtccctaaattgctgactttgattaag
gaattatag
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