Mercenaria mercenaria (northern quahog): 123562200
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Entry
123562200 CDS
T07835
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit-like
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmer03000
]
123562200
Transcription factors [BR:
mmer03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
123562200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_5
Ank_4
Death
SDA1_dom
bDLD3
Motif
Other DBs
NCBI-GeneID:
123562200
NCBI-ProteinID:
XP_053392566
EnsemblRapid:
LOC123562200
LinkDB
All DBs
Position
2:complement(51509246..51566398)
Genome browser
AA seq
1325 aa
AA seq
DB search
MDENGSSRSSSDSVDVSNMDSSPPLLNGHFDMEQFSDEDNGLPTLEIIEQPQQRGFRFRY
ECEGPSHGGLQGASSERHRKTVPTVKIRNYNGPARVVVSLVTDESVPKSHAHKLVGKHCT
DGVCQLDVKAGTSQISFPNLCIQHVTRRKASEVLEQRICNSIIEARKRESKNWNTPILLR
DEDKKRAKLEAAAQAKGMHLNVVRLCFQCYLTDNEGSVTAELNSIVSDPIYDSKAPGANA
LKICRMDKYSGCCTGNDEVFLLCEKVQKDDIMVRFVEQDPEGAVVWEKYGHFGPFDVHRQ
FAIVFKTPEYRDVNIQTPVNVLVMLQRKSDGESSDPKSFTYYPRIRDKEDIDRKRRKLIP
TYHPGSAFGSMKSSIGGTSNGGGAGADGSNGMHNGGSIPNFDNLPLSANHFGQRPLNLGN
AGRPVLQAKRTLPSFQQTTAPALYSSAPTDVLSHSTDFVYEEVSNLSPPMGQLQGGGSPQ
YFMEGQTVGVDTSSNLSAASPYGNSAMMIGSPQNVGQTSVPQFGAGALSPQHQLHPASPQ
NNFLSQQMPMGSQMQNMPVTETGMSSAQTAQMESDFQMTLNDLKVEQVTQPVQVSTLSSE
SLEIDFLLSGAPLNTHAPLNTGIFDQYNQAASQVTENRNFQGQYGNFGASYTKQPYMQQS
CGFYARGSQDADLQDVIDVLDMVDGAPPRAEPCDDYDEVDSARADRYDMTALTPRSGSSA
GQLFEQTAKLEPGMTKAVTVSEQLTVQPEPYTSSVEEEVVTRQPLTSENDTEPIVAKKTL
ATTETSVPAKSLQRTDSSAQTEMDPMLKLAMKTSEALQYYAASGDIRSLLMVQRFLMAVQ
DQDGDLPLHTALINQRYEVFQNILDVMVTLPDAYTRINAYNFHHQTPLHLAVITNQPHAV
DLLIRAGADTTLVDRNGYTPAHLAVLYARDDCLRNLVKYLRQGVTSKQPFPELNLRCYDG
FTPTHLAAQLENLAAMKLLVYGKADVNLPDGKSGRTPLHHAVETDDLSLAAYLILQAGAS
VNVKRFDGNTALHIACGRGNVGMVALLMAGGADPNIENDDIVSDDTESDESDSQESGGES
SENENSDNKNSTKSEDVDDKDTDTEKEPKKSDKDTVDGQEVEEEVLPKRRVGKGLTPADF
ADCNEKILRVLNGEPYSSITESSPDSIQHVTDKMSSLRFISKDSGHGSMGICSTGGDMCR
VEYPVRLSLSQKLDPTSVGSDWQALADKLGMKMLMEGHPGDHSPTRLLLNFYEENGGTVD
RLVQALKDIKRDDCVSLLKDLADQSSGKNDEKDSKVLHKDPKYDSGVSDSYNKSPSPVHR
GHIVT
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaatggaagcagtagaagttcgtcggattcagttgatgtgtctaatatggac
agcagccccccgcttttaaatggacactttgatatggaacagtttagcgatgaagataat
ggtcttccaacacttgaaataatagaacagccacaacagaggggatttcgttttcgctat
gagtgtgaggggccatcacatggaggtctgcagggagcttcaagtgaaagacacagaaaa
actgttcccacagtgaagattcgtaattacaatggaccagctcgtgtagttgtgagccta
gtcacagacgagagtgtaccaaagtcacacgcccacaaactagttggtaaacattgtact
gacggtgtatgtcaactcgatgtgaaggctgggacttctcagatatcatttccaaaccta
tgtatacagcatgtgacaaggaggaaggcatctgaagtattggagcagcgtatatgtaat
tctattatagaagctagaaagagagagtccaaaaactggaatactcctattttactcaga
gatgaggacaagaagagggctaaattggaggccgctgcacaggcaaagggaatgcacctg
aatgttgtccgtctctgtttccagtgttatcttacagacaacgagggcagtgtgactgca
gaactcaactccattgtgtcagaccctatatatgacagtaaagccccaggtgcaaacgcc
ctcaagatctgtcgcatggacaaatatagcggatgttgtacaggaaatgatgaagtgttc
ttattatgtgaaaaagttcaaaaagatgatattatggtaagatttgtggagcaggatcca
gaaggagctgtagtatgggagaagtatggtcattttggaccatttgatgtacataggcag
tttgcaatagttttcaaaacaccagagtatcgtgatgtaaatatccaaactcctgtcaat
gtattggtaatgctacagaggaaatcagatggagaatctagtgatccaaaatcattcact
tactatccaagaatcagagataaggaggacatagatcgtaaacgtagaaagcttataccc
acctatcatcctggaagtgcatttggaagtatgaaatcatctattggtggtacaagtaat
ggtgggggtgctggagcagacggcagtaatggcatgcataatggtggctccattccaaac
tttgataaccttccactatcagcaaatcattttggccagagaccattgaatttaggcaat
gctggccggccagttttacaagctaaaagaaccctgccatcattccagcagacgacagca
cctgctctgtactccagtgcgccaacagatgtcctttcacattctactgactttgtgtat
gaagaagtgtctaacttaagtcctcccatgggacagttgcaaggaggtggttcacctcag
tactttatggaaggccagacagttggggttgatacctcaagcaacttgtctgctgcttca
ccatacggcaattcagcaatgatgattggttccccacagaatgtaggtcagacatcagta
cctcagtttggagctggagccctttctccacagcatcagttacatcccgcttctccgcaa
aataattttctttctcagcaaatgcccatgggatcacaaatgcagaacatgcctgtaaca
gaaactggtatgtccagcgcccagacagcacagatggaatcagacttccagatgacactt
aatgatctaaaagtagaacaggtcacacaaccagtacaagtttccactttgtcatcagaa
agtttagaaatagattttctgttgtctggtgcacctctgaatacacatgcaccgctgaat
acaggtatttttgatcagtacaaccaagcagccagtcaggttacagagaatagaaatttt
caaggtcaatatggaaattttggagcaagctataccaagcagccttatatgcagcagtca
tgtggtttttatgctcgaggttctcaggatgcagatcttcaggatgttattgatgtacta
gatatggtagatggagcccctcctagagctgaaccatgtgacgattatgatgaagtggac
agtgctagagcagatagatatgacatgactgctttaacaccaaggtcaggatcttcagct
ggtcagttgtttgagcagactgcaaaattggaaccaggaatgacaaaggcagtcactgtt
tcagaacaactgacagtacaaccggaaccatatacatcatctgtggaagaagaagttgtt
acacggcaaccacttacttctgaaaatgacacagaacctattgttgctaagaaaactctt
gctaccacagaaacaagtgtaccggcaaagtcattgcagagaactgattcctcggcacaa
acagaaatggatccaatgttgaagttggcaatgaagacatctgaagccttgcagtattat
gcagcatctggagatattcggtctttgttgatggttcagcgcttcctcatggctgtccag
gaccaagatggtgacttacctttgcacacagctttgatcaaccagagatacgaagtattc
cagaatattcttgacgtcatggtaacacttccagatgcgtacaccaggattaacgcttat
aactttcaccaccagacaccgctccaccttgcagtgattacaaaccagccgcatgcggta
gacttgttgatccgtgctggtgcagacaccaccctggtagaccgtaacggttacaccccg
gctcatcttgctgtactgtatgcacgtgatgattgcctcagaaacctggtgaaatatcta
agacagggagtcacctccaaacaaccattcccagaactaaaccttagatgttacgatggt
ttcacacccactcatttagcagcccaattagagaacttggccgcaatgaagttgctcgtg
tacggtaaagcagatgtaaatttaccagacggtaaaagtgggcggacacctttacatcat
gctgtagaaacagatgatctctcactggctgcttatcttatacttcaggctggggccagt
gtgaatgtgaagagatttgatggtaatacagcactccatattgcatgtgggcggggcaat
gttggcatggtagctctcctcatggccggcggtgctgatcccaatattgaaaacgatgat
atagtaagtgatgacacagaatctgatgaaagtgactcacaagaaagtggtggggaaagt
tcagagaatgaaaattcagataacaaaaacagtacaaaaagtgaggatgttgatgataaa
gatacagacactgagaaagaaccgaagaaatccgataaagatactgtagatggacaagaa
gtggaggaggaagtgttgccaaagagaagggttggaaaaggactgacacctgcagatttt
gctgattgtaatgaaaagatcctgagagttttgaatggagaaccatattccagtataaca
gaatcgagtccagacagtatacaacatgtcactgataaaatgtcatctctgcgatttata
tcaaaagatagtggacacggaagtatgggaatatgttctacaggaggtgatatgtgcaga
gtggagtatcctgtgagactgagtctgtcacagaagcttgatccaacaagtgttggctct
gactggcaggccttggctgataaacttggtatgaagatgttgatggaaggtcatcctgga
gatcacagtcccacaagattacttctcaatttttatgaggaaaatggtggcactgttgat
agactggttcaagcattgaaagatatcaagagagatgactgtgtcagtttactgaaagat
ttggcggaccagtcttctggaaaaaatgatgagaaagacagtaaagttttacataaggat
ccgaagtatgattctggtgtatcagacagttataataaatctccttcacctgtacataga
ggacatattgtgacatag
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