Marmota marmota marmota (Alpine marmot): 107135843
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Entry
107135843 CDS
T09644
Symbol
Clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107135843 (Clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmma03019
]
107135843 (Clp1)
Enzymes [BR:
mmma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
107135843 (Clp1)
Messenger RNA biogenesis [BR:
mmma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107135843 (Clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_18
MMR_HSR1
TniB
AAA_16
AAA_22
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
107135843
NCBI-ProteinID:
XP_015333442
Ensembl:
ENSMMMG00000017714
UniProt:
A0A8C5ZYH6
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaggccaatgatgacaagaagccaacaactaaatttgaactagagcgagaa
acagaacttcgctttgaggtggaggcttctcagtcagttcagttggagttgctgactggc
atggcagagatctttggcactgagctgactcgaaacaagaagtttacttttgatgctggt
gctaaggtggctgttttcacatggcatggctgttctctgcaactgagcggccgcactgag
gtggcttatgtttccaaggacacccctatgttgctttacctcaacactcacacagccttg
gaacagatgcgaaggcaggcagaaaaggaagaagaacgaggccctcgagtgatggtagtg
ggccccactgatgtgggcaagtccacagtatgtcgcctgctgctcaactatgcagtgcgt
ttgggccgccgtcctacttatgtggagctggatgtaggccagggctctgtgtccattcct
ggtaccatgggggccctctacattgaacggccagcagatgttgaagagggtttctctatc
caggcccctctggtgtatcattttggctccaccactcctggcactaacatcaagctttat
aataagattacatcccgtttagcagatgtgtttaaccagaggtgtgaggtgaaccgaagg
gcatctgtgagtggctgtgtcattaacacctgtggctgggtcaagggctctggttaccag
gccttggtgcatgcagcttcagcttttgaggtggatgtagttgtggttctagatcaagaa
agactgtacaatgaactgaaacgggatctgcctcattttgtacgtactgtgctgctccct
aagtcagggggtgtggttgaacgctccaaagacttccgccgggaatgtagggatgagcga
atccgtgagtatttctatggattccgaggctgtttctatccccatgccttcaatgttaaa
ttttcagatgtcaaaatctacaaagttggggcacctactattccagactcctgtttgcct
ttaggcatgtctcaggaagacaatcagcttaagctagtacctgtcacccctggccgagac
atggtacaccacctattgagtgttagcactgctgagggtacagaggagaacctttctgag
acaagtgtggctggcttcattgtggtgaccagtgtggacctggaacatcaggtatttact
gtcctgtctccagctcctcgcccactgcctaagaacttccttctaatcatggatatccgg
ttcatggatctcaaatag
DBGET
integrated database retrieval system
