Mustela nigripes (black-footed ferret): 132004198
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Entry
132004198 CDS
T09425
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mnp
Mustela nigripes (black-footed ferret)
Pathway
mnp03020
RNA polymerase
mnp03420
Nucleotide excision repair
mnp05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
mnp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132004198 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
132004198 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
132004198 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnp03021
]
132004198 (POLR2A)
03400 DNA repair and recombination proteins [BR:
mnp03400
]
132004198 (POLR2A)
Enzymes [BR:
mnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132004198 (POLR2A)
Transcription machinery [BR:
mnp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132004198 (POLR2A)
DNA repair and recombination proteins [BR:
mnp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132004198 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
132004198
NCBI-ProteinID:
XP_059236360
LinkDB
All DBs
Position
16:complement(57997083..58020339)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSHKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcaattcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggcggt
atcaaataccccgagaccacagagggaggccgccccaagcttggggggctgatggacccg
aggcagggggtgatcgagcggaccggccgctgccagacctgtgcgggaaacatgacggag
tgtcctggccactttggccacatcgagctggccaagcccgtattccacgtgggcttcctg
gtgaagacgatgaaagtgttgcgctgcgtctgcttcttctgctccaagctgctcgtggac
tccaacaacccaaagatcaaggacattttggccaagtccaaggggcagcccaagaagcgg
ctgacgcacgtgtatgacctgtgcaagggcaagaacatctgcgagggtggtgaggagatg
gacaacaagttcggggtggagcagccggagggcgacgaggatttgaccaaagagaagggc
catggtggctgcgggcggtaccagccccggatccggcgctcgggcctggagctatacgcg
gagtggaagcacgtcaatgaggactcccaggagaagaagatcctgctgagtcctgagcga
gtgcatgagatcttcaagcgcatctcagatgaggagtgcttcgtgctgggcatggagccc
cgctatgcgcggcccgagtggatgatcgtcaccgtgctgcctgtgcccccgctgtccgtg
cggcccgccgtggtgatgcagggttctgcccgcaaccaggacgacctgacgcacaagctg
gcggacatcgtgaagatcaacaaccagctgcggcgcaacgagcagaacggcgcggcagcg
cacgtcatcgccgaggacgtgaagctcctgcagttccacgtggccaccatggtggacaac
gagctgcctggcctgccccgtgccatgcagaagtcggggcgccccctcaagtccttgaag
cagcggctgaagggcaaggaaggccgggtccgagggaacctcatgggcaagcgcgtggac
ttctcagcgcgcaccgtcatcacccccgaccccaacctctccatcgaccaggtgggcgtg
cctcgctccatcgctgccaacatgaccttcgcagagattgtcacgcccttcaacatcgac
agactccaggagctggtacgcagggggaacagccagtacccgggggccaagtacattatt
cgggacaatggcgaccgtatcgacctgcgtttccacccgaagcccagtgaccttcacttg
cagaccggctacaaggtggagcggcacatgtgcgacggagacatcgtcatcttcaaccgc
cagccgactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
actttccgcttaaatctgagtgtgacgactccttacaacgctgactttgacggggacgag
atgaacttgcacctgccccagtccctggagacgcgggcggagatccaggagctggccatg
gtgccacgcatgatcgtcaccccccagagcaatcggccggtcatgggcatcgtgcaggac
acgctcacggctgtgcgcaaattcaccaagagagacgtctttctggaacggggggaggtg
atgaacctgctgatgtttctgtccacgtgggacgggaaggtgccgcagccagccatactg
aagccacggcccttgtggacgggcaaacagatcttctccctcatcatccccggccacatc
aactgtatccgcacccacagtacccatccagacgacgaggacagcggtccttacaagcac
atctctcccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtcggccggctctctggtgcacatctcttacctggagatg
ggccatgacgtcactcgccttttctactccaacattcagaccgtcatcaacaactggctg
ctgatcgagggtcacaccattggcattggggactccattgccgactccaagacctaccag
gacatccaaaacactattaagaaggccaagcaagatgtgatagaggtcattgagaaagct
cataacaacgagctggagcctaccccggggaacaccctgcggcagacctttgagaaccag
gtgaaccgcattctcaatgacgcccgagacaagaccggctcctctgcccagaagtccctg
tctgagtacaacaacttcaagtctatggtcgtgtctggggccaaaggttccaagatcaat
atctcccaggtcattgccgtcgtcggacagcagaacgtggaagggaaacggatcccgttt
gggttcaagcacaggaccttgcctcacttcatcaaggacgactacgggcccgagagccgc
ggcttcgtggagaactcttacctggcaggccttacgcccaccgagttcttcttccatgcc
atggggggtcgcgaggggctcatcgacacggccgtcaagactgctgagactgggtacatc
cagcggcggctcatcaagtccatggagtcggtgatggtgaagtatgacgccaccgtgcgc
aactccatcaaccaggtggtgcagctgcgctacggtgaggacggcctggctggcgagagc
gtcgagttccagaacctggccaccctgaagccgtcgcacaaggctttcgagaagaaattc
cgctttgactacacgaatgagagggcgctgcggcgcaccctgcaggaggacctggtgaag
gacgtgctgagcaacgcccacatccagaacgagctggagcgggagttcgagcgcatgcgg
gaggaccgggaggtgctcagggtcatcttccccaccggcgacagcaaggtggtgctgccc
tgtaacctgctgcgcatgatctggaacgctcagaaaatcttccacataaacccccgtctg
ccatccgacctgcaccccatcaaggtcgtagagggagtcaaggagttgagcaagaagctg
gtgatcgtgaacggggacgaccccctgagccggcaagcacaggagaacgccacgctcctc
ttcaacatccacctgcgctccacgctctgctcccgccgcatggccgaggagttccggctc
agtggggaggccttcgactggctgctcggggagattgagtccaagttcaaccaagccatt
gcccatcctggggagatggtgggtgccctggccgcacagtcccttggagaacctgccacc
cagatgaccttgaacacctttcactacgccggtgtgtctgccaagaacgtgaccctgggt
gtgccccgtctcaaggagctcatcaacatctccaagaagccgaagacgccttcgctcact
gtcttcctgctgggccagtctgctcgagacgctgagagggccaaggacattctgtgccgt
ctggagcatacgacactgaggaaggtgaccgccaacacagccatctactacgaccccaac
ccccagagcacggtggtggcagaggatcaggaatgggtgaatgtctactacgagatgcct
gactttgacgtggctcgcatctccccctggcttttgcgggtggagctggaccggaagcac
atgaccgaccggaagctgaccatggagcagattgccgagaagatcaatgcgggtttcggc
gacgacttgaactgcatctttaatgacgacaacgcggagaagctggtgttgcgcatccgg
atcatgaatagcgacgagaacaagatgcaagaggaggaggaagtggtagacaagatggat
gacgacgtgttcctgcgctgcatcgagtccaacatgctgactgacatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacctgccgcagacagacaataagaagaagatc
atcatcacagaggacggggagttcaaggccctgcaggagtggatcctggagacggacggc
gtgagcctgatgcgggtgctgagcgagaaggacgtggaccccgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcattgaagccgtgcggaaggctctggagcgg
gagctgtaccacgtcatctcctttgacggttcctacgtcaattaccgccacttggctctg
ctgtgtgacaccatgacctgtcgaggccacctgatggccatcacccgacatggggtcaac
cgccaggataccgggcctctcatgaaatgctcctttgaggaaacggtggatgtgctgatg
gaggccgccgcacatggagaaagcgaccccatgaagggggtgtcggagaacatcatgctg
ggccagctcgccccagctggcaccggatgcttcgacctcctgctcgatgccgagaagtgc
aagtacggcatggagatccccaccaacatccccggcttgggggccgccggacccactggc
atgttcttcggctcagcgcccagccccatgggagggatttctccagccatgacgccctgg
aaccagggtgcaactccggcctatggagcctggtcccccagtgtcgggagtggaatgacc
ccgggggcagccggcttctcccccagcgccgcctccgacgccagcggcttcagccctggc
tactcgcctgcctggtctcccacgccgggctccccaggctcgcccggcccctccagcccg
tacatcccctcgccaggtggtgctatgtctcccagctactccccgacatcacccgcctat
gagcctcgctcccctggaggctatacacctcagagtccctcttactcccctacctcacct
tcctactcccccacctctccatcctactctccaaccagtcccaactacagccccacgtca
cctagctactccccgacctcgcccagctactccccgacttcacccagctactccccgact
tctcccagctactccccaacctctcccagctattctccaacttccccaagctactctccc
acttctccgagctactctccgacctctcccagctactccccaacctctcccagctactcc
cccacctctcccagctattcccccacctctcctagctactcgccaacgtccccaagctac
tctcccacgtccccaagctactctcccacgtccccaagctactcgccaacatccccaagc
tactcaccaaccagccctaactattctccaaccagtcccaattacaccccgacgtctcct
agctacagtccgacgtcaccaagctactccccgactagtcccaattacacgcccacgagc
cctaactacagcccaacctctccaagttactctccaacttcacccagctactccccaacc
tcgccaagctattccccgtcaagcccacgatacacaccacagtctccgacctataccccg
agctcccccagctacagccccagctcccccagctacagcccaacctcgccaaagtacacc
cccaccagcccctcgtacagccccagctccccagagtataccccgacctctcccaagtac
tcacctaccagcccgaagtattcgcccacctcccccaagtactcacccactagccctacc
tactcgcccaccaccccaaagtactccccaacatctcctacttactcgccgacctctccg
gtctataccccgacctcccccaagtactcgcccaccagccctacctactcgcccacctcc
cccaagtactcacccaccagccccacctactcacctacctcccccaaaggctctacctac
tcacccacttccccgggctactcgcccaccagccccacctacagcctcaccagtccggcc
atcagcccggacgacagcgatgaggagaactga
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integrated database retrieval system
