Macrobrachium nipponense (oriental river prawn): 135204903
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Entry
135204903 CDS
T09903
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03020
RNA polymerase
mnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135204903
09124 Replication and repair
03420 Nucleotide excision repair
135204903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mnz03021
]
135204903
03400 DNA repair and recombination proteins [BR:
mnz03400
]
135204903
Enzymes [BR:
mnz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135204903
Transcription machinery [BR:
mnz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135204903
DNA repair and recombination proteins [BR:
mnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135204903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
135204903
NCBI-ProteinID:
XP_064091216
LinkDB
All DBs
Position
47:36443517..36465070
Genome browser
AA seq
1912 aa
AA seq
DB search
MTTSQDSKAPLRTVRRVQFGILSPDEIRRMSVTEGGIRYSEVYENGRPKLGGLMDPRQGC
LDRHTRCTTCAGNMSDCPGHFGHLDLAKPVYHVGFLTKTVKILRCVCFYCSKLLYNSQHP
KVREIVTKSKGQPRKRLLHIYNLCKSKMICEGGEEVDITKEPEDPTQVVKKTSGHGGCGR
YQPNVKRVGIELMAEWKHVNEDTQERKQVLTAERVYEIFKHISDEDCYLLGMDPKYARPD
WMILVVLPVPPLPVRPAVVMYGTARNQDDITHKLADIIKANNELLRNEQAGAAAHIIAEN
IKMLQFHVATMTDNDIPGMPKALQKSGRPLKALKARLKGKEGRIRGNLMGKRVDFSARTV
ITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNITKMIELVKRGNNQYPGAKYIVRDNGAR
IDLRYHPKPSDLHLQCGYKVERHITDGDLIIFNRQPTLHKMSMMGHKVKVLPWSTFRMNL
SVTSPYNADFDGDEMNLHVPQSMETRAEIENMHLTPRMVVTPQSNRPVMGIVQDTLTAVR
KMTKRDVFLEKCEMMHLLMFLPIWDGRLPQPAILKPKPLWTGKQIFTLIIPGNLNLIKTH
ATHPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGASSGSMMHLAWMELGHEIAG
RFYGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRVIQDTISKAKEDVKEVIQKAHNDELE
PTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIA
CVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEFVEFQTL
PTVKLSNRRFEDRYKFDITNERYLRKLFAEEVVREVIGSPDAIACIEGEWLRLQEDRQAL
RTIFPKGDTKVVLPCNLERMIWNVQKIFHINKRTPTDLSPITVVESVKTMLDKCVIVSGE
DRISRQANENATYLFQCLVRSTLCTKKVAEEFKLTQEAFHWLVGEIETRFNQSMASPGEM
VGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLLGS
AARDAEKAKNVLCRMEHTTLKKVTSNTAIYYDPDPQNTVIEEDQEFVNVYYEMPDFDVAR
ISPWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAEKLVLRIRIIVGDD
KLNDEPEEQVDKMEDDTFLRCIEANMLNDLTLQGIESISKVYMHLPQTDEKKRIIINDAG
EFKAIAEWLLETDGTALMKVLSERDVDPVRTSSNDILEVFEVLGIEAVRKCIEKEINAVL
MFYGLYVNYRHLALLCDVMTSKGHLMAITRHGINRQDTGALMKCSFEESVDVLMEAASHA
EVDPVRGVSENIMLGQLPKIGTGAFDLVLDDEKCKLGMEIPMPGSGMIMTGSVFGAASPS
SSMTPAQTPWASGSTPLMSPYSGWTPGLGSGMTPGGPAFSPVVTAETTGISPGYSPAWSP
QPGSPGSPGGMSPYFPSPANALSPSYSPSSPAYQPTSPSITPASPGYSPTSPTYSPTSPQ
YSPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYAPNYSPS
SPGYSPTSPSYSPTSPSYSPSSPQYSPASPSYSPTSPKYSPTSPSYSPTSPTYSPGSPSY
SPTSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYSPSSPQYSPSSPKYSPTS
PTYSPSSPKYSPTSPTYSPTTPGYSPTSPLYSPTLDEEEQQQEKKHKKKQSH
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atgacgacctcgcaggacagcaaagctcccttgaggactgtgcgcagggtacagttcggt
atcctcagccccgatgagattcgccgaatgtctgtgacagaaggaggcatccgctactca
gaggtttatgagaatggccgcccaaaactaggagggctgatggaccctcgtcaaggctgc
ctggaccgccacacacgatgtacaacctgtgccggcaacatgtccgactgcccgggacac
ttcggccacctggacttggccaaacctgtctaccacgtgggcttcctgaccaagactgtg
aagatcttgcgatgcgtttgtttctactgcagcaagctgctttataacagtcaacaccca
aaagtccgcgagatcgtcaccaagtccaagggccaaccgaggaagcgtctgctccacatc
tacaacctctgcaagagcaagatgatctgcgaggggggcgaagaggttgacatcaccaag
gaaccggaagacccaacccaggtggtcaagaagacctcaggtcacgggggttgcggaagg
taccaaccaaacgtcaagagggttggaatagaacttatggccgagtggaaacatgtcaac
gaggacacgcaggagagaaagcaggttttgacggccgagagagtctacgagatattcaag
catatttcagacgaggactgctacttgctgggcatggacccaaaatatgcccgacctgac
tggatgatcctggtggtgctgccggtcccaccattgcccgttcgccctgctgtcgtcatg
tacggcacggcccggaaccaggacgacatcacccacaagctagcggacatcatcaaggcc
aacaacgagctgctgaggaacgaacaggcaggcgccgcggcccacatcattgcagagaac
atcaagatgctgcagttccacgtcgcgacgatgaccgataacgacatccccggcatgccg
aaggcactgcagaagtccggcaggccgctgaaggccctgaaagcccggctgaaggggaaa
gaagggaggatcagaggtaacctgatggggaagcgagtggacttctcggcccgcactgtc
atcacggccgatcccaacctcaggattgaccaggtgggcgtgccaaggtcgattgcccag
aacctcacgtacccggagattgtgacgccttttaatatcaccaagatgatagaactggtg
aagaggggcaacaaccagtaccccggggccaagtacatagtccgagacaacggtgctcga
atcgacctgaggtatcacccgaagccttctgacctccaccttcagtgtgggtacaaggtc
gaacgtcacatcacagacggtgacctgatcattttcaaccgtcagcccaccctgcataag
atgtccatgatggggcataaggtcaaggtcctgccgtggtcaaccttccgcatgaacctg
tcggtgacgtcgccctacaacgccgacttcgacggggacgaaatgaacctccacgtgccc
cagagcatggagacgagggccgagatagagaacatgcacttgacgcccaggatggtggtg
acgcctcaatccaaccggcccgtcatgggcatcgtgcaggacaccctcaccgccgtcagg
aagatgacgaagagggacgtcttcctggagaagtgtgaaatgatgcacctcctcatgttc
ctccccatttgggacggacgcttgccccagccagccatcttgaaaccgaagcccctctgg
actggtaaacagatcttcactctcatcatcccagggaacctgaacctcatcaagacccat
gccacacatccggacgatgaagacgatggaccttacaagtggatatcccccggagatacg
aaggtgttggtagagcatggtgaactcatcatgggtatcctgtgcaagaaaacccttggg
gcatcctctggctccatgatgcacttggcatggatggaactcgggcacgagattgccggt
cgcttctacggcaacatccagacggtggtcaacaactggctcctgctggaaggtcacagc
attggcatcggcgacaccatctccgaccccaacacctaccgtgtcatccaggacaccatc
tccaaagccaaggaggacgtgaaggaagtcatccagaaggcccacaacgatgaacttgag
cccacgcccggcaacaccctgaggcagactttcgagaaccaggtgaacagaatcctcaac
gacgctcgtgacaagactggaggttcggccaagaagtccctgactgagtacaacaacctg
aaggccatggtagtggcagggtctaaagggtccaacatcaacatctcccaggtcatcgct
tgtgtggggcagcagaatgttgagggtaagaggatccccttcggcttcaggaagcggacg
ttgcctcacttcatcaaggatgattacggccccgagtccaggggtttcgtggagaactcg
tatctcgccggactgacgccttccgagttctacttccacgccatgggtggtcgtgaggga
ttgatcgacacggctgtcaagactgccgagactgggtacattcagagacgtctcatcaag
gccatggagagcgtcatggtcaactatgacgggactgtcagaaacagcgtcagccaagtc
atccagctcagatatggagaggacggcttggctggcgaatttgttgaattccagacctta
ccaacggttaaactatccaacagacgttttgaagacaggtacaaattcgacatcaccaat
gaacgctacctgaggaagctttttgcagaggaagtcgttagggaggttataggctctcca
gatgccattgcatgcattgagggtgaatggctgagactccaggaagataggcaggctctg
aggaccatcttccccaaaggggataccaaggtcgtacttccatgcaacctggaaaggatg
atctggaacgtgcaaaagatcttccacataaacaaacggactccaacggacctctcccca
atcacggttgtggagagcgtgaagaccatgctggacaagtgtgtgattgtgtcgggagag
gatcggatcagcagacaagccaacgagaacgccacttacctgttccagtgtctggtcagg
tcgacgctctgtactaaaaaggtcgcggaggaattcaagctgacccaggaggccttccac
tggctcgttggtgagatcgagacccgcttcaaccagtctatggcctcccctggggagatg
gtgggagccttagcagcccaatccctgggcgaacctgccacacagatgaccctcaacact
ttccattttgctggtgtatcctccaagaatgtaaccttgggagtgcctcgcctgaaggaa
attattaacatcagcaagagacccaaggccccatcactgacggtgttcctcttggggtca
gctgccagggatgctgagaaggccaagaatgtcctgtgtcgtatggagcacactacgctc
aagaaggtaacatcaaacacagccatctactatgaccctgacccacagaatactgtcatc
gaagaggaccaggaattcgtcaacgtctactacgagatgccagattttgacgtagccagg
atatcaccgtggctccttcgtattgaacttgatcggaaaaagatgacagataaaaagcta
acaatggaacagatctcccagaagatcaactcaggctttggagacgacctgaactgcatc
tttaatgacgacaatgcagagaagcttgttctcaggatcagaattattgttggagatgac
aaactgaacgacgaacccgaagaacaggttgacaagatggaagacgacaccttcctccga
tgcatcgaggccaacatgttgaacgacctgaccctgcaagggattgaatccatctccaaa
gtgtacatgcatttgccccagactgacgagaagaaaaggatcatcatcaatgacgctggt
gaattcaaggccattgcagaatggctgctggaaactgacggtacagccctcatgaaggtg
ttgtcagagagagatgttgatcccgtgcgtacttcttccaacgacatccttgaggttttc
gaggtcctcggcatcgaggccgtgcgtaagtgcatcgagaaggagatcaacgccgtgctg
atgttttacggtctgtacgtaaattatcgtcacctggctttgctctgtgacgtcatgacc
agcaagggccatctcatggccatcactcgtcacggcatcaaccgacaggatacgggggct
ctcatgaagtgctcctttgaagagtctgtggacgtgctgatggaggctgcctcccatgcc
gaagtggaccctgtcagaggcgtttcagagaacatcatgttgggccagttgcctaaaata
ggcacaggtgcctttgatttggttcttgatgatgaaaagtgcaaattgggcatggaaata
cccatgccagggtctggcatgatcatgacgggcagcgtctttggggcagcttccccgtcc
tctagcatgactccagcccagactccttgggcctctggctctacccccttaatgtcgcca
tacagcggctggacgcctgggctgggcagcggtatgactccaggaggacctgctttctcc
cccgtggtgactgcggaaactacgggcatatcgcccggttattcccctgcctggtcgccc
caacctggaagtcctgggtcaccgggaggaatgagtccgtacttccccagtccggcgaac
gcgctctccccctcctactcgccttcttctccggcatatcagcccacttccccaagtata
actccagcatctccagggtattccccaacatctccaacatacagcccaaccagcccccag
tattcaccgacgtcacctcagtattcgcctacatccccatcttatagccccacttctccc
tcgtattccccaacgtcaccgtcatactcgccaacgtctccctcgtactcgccaacttcc
ccttcgtactcacctacttctccttcctactctccaacatctccgtcgtactcgccaaca
tctccttcatactctccaacaagtccctcttattccccaacatccccgagctacagtcca
acatcaccatcttattctccaacatctccaagctacagcccaacttctccatcatattcc
ccaacatctccttcgtattcaccgacgtccccaagctacgctccaaattattctccttct
tcacctggctattctccaacaagtcccagctacagtccaacttctccttcatactcccca
agctcacctcagtattctcccgcttccccttcatactctccaacgtcccctaaatattcc
ccaactagtcccagttactccccgacaagtccaacttactccccaggatcaccgtcgtac
tccccaacgtcgccgaaatactctcctacaagtccaacgtactccccaacctctccgtca
tattccccatcctctcctaaatactcaccgacctcccccaagtattctccaacttcccca
acttacagtccctccagtcctcagtacagcccctccagccccaaatactcaccaacctca
ccaacgtacagtcctagcagccctaagtatagtcctacgagcccaacttacagccctact
acccctggatacagtcccacgtctcctctgtactctccgacgctagatgaggaagaacag
cagcaggagaagaaacacaagaagaagcaaagccactaa
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integrated database retrieval system
