Monomorium pharaonis (pharaoh ant): 105834243
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Entry
105834243 CDS
T05760
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mpha
Monomorium pharaonis (pharaoh ant)
Pathway
mpha03020
RNA polymerase
mpha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105834243
09124 Replication and repair
03420 Nucleotide excision repair
105834243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpha03021
]
105834243
03400 DNA repair and recombination proteins [BR:
mpha03400
]
105834243
Enzymes [BR:
mpha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105834243
Transcription machinery [BR:
mpha03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105834243
DNA repair and recombination proteins [BR:
mpha03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105834243
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
105834243
NCBI-ProteinID:
XP_012532028
LinkDB
All DBs
Position
Unknown
AA seq
1905 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPK
IKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENMETQPQDRKPGHGGCGRYQ
PNLRRSGLDVTAEWKHVNEDSQEKKIILSAERAWEILKHIKDEESFILGMDPKFARPDWM
IVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNGERID
LRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRTVLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGTAGMFFGSVTG
ISSMSPQMTPWMGATPGYGASSMSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQP
GSPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYT
PASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASP
TYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYS
PTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDE
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtccgactccaaagcacctctgcgaacggtgaaacgggtccagtttggcatc
ctgtcgccagatgaaatacgtcgtatgtcagttactgatggtggcatacggtttcctgaa
actatggaaggtggtcgccctaaactgggtggcctcatggatccacggcaaggtgttatt
gacagaaattccaggtgtcagacttgtgccggcaatatgacagaatgccctggccatttt
ggtcatatagatctagcaaaaccagtattccatgtaggatttattaccaaaactataaag
atattgagatgtgtgtgcttctactgctccaaattgcttgttaaccctcataatccaaag
attaaagaaattgtcatgaagacgaagggtcagccacgaaaacgacttgcattcgtttac
gatctgtgtaaaagcaagaacatttgcgaaggcggagatgagatggacattaataaggag
aatatggaaactcaaccgcaagacagaaaaccaggacacggtggatgtggtagatatcag
cccaatctcagacgatccggcttagatgtaactgcagagtggaagcatgtaaacgaggat
tcacaagaaaagaagataattctctcggccgagagggcctgggaaatcttgaagcacatt
aaggacgaggagtccttcatcttgggcatggatccgaaatttgctaggccggattggatg
atagtcacggtgttgccagtgccaccgttgtctgtgagacctgcagttatcatgtatggt
tctgctaaaaatcaggatgacttgacgcacaaactggcggacattattaagtcgaacaac
gagttactacgaaacgaacaatccggcgcggcagcgcacgtgatctccgagaacataaag
atgctgcaattccatgtggcgacgcttgtcgacaatgacatgcctgggatgccccgggcg
atgcaaaagtcgggcaaaccgcttaaagcgttgaaagcccgactgaaaggaaaggaaggc
aggattcgtggaaatttgatgggtaaacgcgtggacttctccgcgcgtaccgttatcacg
ccggatcctaatctgcgcatcgatcaggtgggtgtcccgcgcagtatagcgcagaacttg
acatttccagagattgtgacgcccttcaacattgacaagatgcaagtactggttaggcgt
ggcaattcacaatatcccggcgcgaagtacattgttcgcgacaacggcgagagaatcgat
ttgcgtttccatcccaaatcctcggatctgcatttgcaatgcggctaccgagtagaacgg
cacatccgcgacggcgatctcgtcatcttcaatcgtcagccgactcttcacaagatgagt
atgatgggtcatcgtgtcaaggtgttgccatggagcacgtttcgcatgaatttgagctgc
acgtcgccatacaacgctgactttgatggcgacgaaatgaatctgcacgtgccacaatcg
atggagacgcgcgccgaggttgagaacattcacgtgacgccgcgacagattatcaccccg
caggcgaacaagccagtcatgggaattgtacaggataccttaacagcagtcaggaagatg
actaagcgcgacgtattcatcgagaaggagcaaatgatgaatctgctcatgtttttaccg
agctgggacggcaaaatgccgcagccgtgtattctgaagccgaagccgctgtggactggc
aagcagttgttctcccttatcatcccgggtaatgtaaacatgatacgaacgcacagcaca
catccagacgaagaggacgacggtccgtacaaatggatctcgccaggcgacaccaaagta
atggtggaacatggcgaacttgtgatgggtattctctgcaaaaagactctgggtacctcc
gccggatctttacttcacatctgtatgctcgaactgggccacgaagtgtgcggacgtttc
tacggtaacattcaaactgttatcaacaattggctgttattggagggtcattcaatcggt
attggcgacactattgccgatccgcagacatacttggagatccagaaggcgatcaagaag
gctaaagaggacgtgatagaggtgattcagaaggcgcacaacatggaactcgagcccacg
cctggcaacacacttcgccagacctttgaaaatcaggtgaacaggatactgaacgacgct
cgagacaagaccggtggctctgcaaagaagtccttgacagaatacaataatttgaaggcc
atggtggtgtcgggttcgaaaggctccaacatcaatatctctcaagtcatcgcttgcgtc
ggtcaacagaatgtcgagggtaaacgtataccctttggcttccgtaaaagaacgctgcca
catttcatcaaagacgattacggaccagagtcccgtggttttgttgagaattcatatctc
gctggtctcacgccgtctgagttctacttccacgcgatgggaggtcgtgaaggtctcatc
gataccgccgtgaaaacggccgagactggttacattcagcgtcgtttgataaaggctatg
gagtctgtgatggtgcactacgacggcaccgtacgcaactccgtcggtcagttgattcag
ctgcgttacggagaggacggtctctgcggcgagactgtcgagtttcagaatttgccaacg
attaaggtgagcaacaaagccttcgagaaaaagtttaagtttgatccgaccaacgagcga
tacttgcgccgtatattcaacgaggacattgtccgagagatgatgggctccggagaggtg
atatccgaattagagagagaatgggaacagttgaatagagaccgcaccgtgcttcgggag
atcttcccgagcggcgagtccaaggttgtgttgccctgcaatctgcaacggatgatttgg
aacgtgcagaagatattccacatcaataagcgagcaccgaccgatctcagtcctatgaga
gtgattcaaggagtgaagaatcttttggagaaatgtatcattgtcgctggagacgataga
ctgagcaaacaggcgaacgagaatgcgacattactgttccagtgtttagtcagatcaact
ttgtgcaccaagtgtgtttccgaagagttcaggctgtccagtgaggcttttgagtggttg
atcggagaaattgagacgagattccagcaagctcaggtatcccctggtgagatggtcggc
gcattggccgcacagtctctcggcgagcctgccactcagatgaccctgaatactttccac
tttgctggtgtatcgtcaaagaacgtaactctcggtgtgcccagattgaaggagatcatc
aacattagtaagaaaccaaaagcgccatcgcttacagtatttttaacgggcgcggccgcg
cgtgacgctgaaaaggcgaagaacgtgctctgccgactggagcacacgacattgaaaaag
gtgaccgcgaatacggcgatatactacgatccggatccgcaaaacactgtgatcgcggag
gatcaggaatttgtcaacgtttactacgagatgcctgactttgaccccacgaaaatatca
ccgtggttattgcgaattgaactggacaggaaacggatgaccgacaagaagctgacgatg
gaacagatcgcggagaagatcaatgctggtttcggcgacgatctcaattgcatcttcaac
gatgacaatgccgagaagctggtgttgcgtattagaataatgaatagcgatgataacaag
ttccaagacactgacgaggagactgtggacaagatggaggatgacatgttccttcggtgt
atcgaagctaacatgcttagtgatatgactctgcagggtatcgaagctatcggaaaggtt
tacatgcatctgccacaaaccgattccaaaaaacgcattgtcattacggagactggtgaa
ttcaaggctattgcagaatggcttttggaaaccgatggtacgagcttgatgaaggtatta
agcgaaagagacgtggatcccgtgcgaacgttcagcaacgatatttgcgagatattccaa
gtgctcggcatcgaagccgtgcggaaatcagtggagaaagaaatgaacgcggtattgcag
ttctatggtctttatgtcaactatcgacatctcgccttactttgtgacgtcatgacggcg
aagggtcatctcatggcgataacacgtcacggaatcaatagacaagataccggtgctttg
atgagatgttcctttgaagaaacagttgatgtgttactggatgctgcatctcatgcagag
gtagatccaatgagaggagtatccgaaaatattataatgggacaacttcctcgaattgga
acaggatgctttgatctattattggacgcggagaagtgcaaatctggaatcgaaattcct
atggcggttggcgcaggcatgatgggaacggcgggaatgttctttggcagcgtaactggc
atatctagtatgagtcctcaaatgactccttggatgggagctactcctggttatggtgcg
tcaagtatgtcgccagcattgagcagcggtatgacgccaggtggtgcatgtttctcacca
tcgggcgcgtcggatgcatcaggcttatcgccagcgtactcggcttattcaccacaacct
ggaagtcctggtagtccaggtccgagtatgagtccattcccaatgtcaccagctggtgca
gcatcgcctagttattctccgacgtcaccagcatatctacctacatcgcccagtatgacg
ccttcaagtccaaattattcacctacaagtccaacgtattcgccaaccagtccgaattat
tcgcctacttctccgagttattcgccaacgagtccgagttactcgccgacttctccgagt
tactcgcccacgagtccgagttactcgcctacttctccaagttattcgccgacgagtccc
agttattcgcccacctcgccaagttattcgccaactagtccgagctattcgcccacgtcg
ccgagctattcaccaacctcgccgagttactccccgacaagcccgagttactcgccaact
tccccaagttactccccgacaagtccaagttattcacccacgagtccaagttattctcct
acgagcccgagttattcaccaacttcgccgagctattcaccaagttcgcctaattacaca
cccgcctcgccctcgtattcgcccacttcacctagttattcgccgagctcgccgcaatac
tcgcccgcgagtccgagttattctcctagcagtcccaaatattcaccgacaagtccaagt
tattctcctacttctccgtcattcgccggtacatcaccgcaatacacacctgctagccct
acgtactcgcccaccagtccgacgtattcccctacgagcccatcgtactcaccgagttcg
ccgcagcataccgcgtctggtagcacgcgatattcacccagtagcccgaattattcaccc
accagtccaacatactctcctacaagtccacagtactcaccgtcaagcaccaaatattcg
cccacaagtcctacttacacacctacaagcccgagttattctccaacgagtccgacgtac
tcgccgcccgtaccgggatactctcccacgagtcccacatactcgccggcgtcacccgct
tacgagaccgacgaataa
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integrated database retrieval system
