Micromonas pusilla: MICPUCDRAFT_45178 Help Entry MICPUCDRAFT_45178 CDS       T02696                                  Symbol JGI:MicpuC2_45178 Name (RefSeq) uncharacterized protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism mpp  Micromonas pusilla Pathway mpp03020   RNA polymerase mpp03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:mpp00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     MICPUCDRAFT_45178 (JGI:MicpuC2_45178)   09124 Replication and repair    03420 Nucleotide excision repair     MICPUCDRAFT_45178 (JGI:MicpuC2_45178)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:mpp03021]     MICPUCDRAFT_45178 (JGI:MicpuC2_45178)    03400 DNA repair and recombination proteins [BR:mpp03400]     MICPUCDRAFT_45178 (JGI:MicpuC2_45178) Enzymes [BR:mpp01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      MICPUCDRAFT_45178 (JGI:MicpuC2_45178) Transcription machinery [BR:mpp03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      MICPUCDRAFT_45178 (JGI:MicpuC2_45178) DNA repair and recombination proteins [BR:mpp03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       MICPUCDRAFT_45178 (JGI:MicpuC2_45178) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R Motif Other DBs NCBI-GeneID:  9680976 NCBI-ProteinID:  XP_003055604 JGI:  45178 UniProt:  C1MI48 LinkDB All DBs Position Unknown AA seq 1694 aa AA seqDB search MSVIDRFPHSTAELRRVKAVQFGVLSPEEIRKMSVCEVETAETYEKGRPKRGGLSDPRMG TMDRSMTCETDGMDSKDTPGYFGHLELAKPVYHHGFINNVVRVLRCVGYSSSKLLLDKND DPRFVEIMKIRNPKHRLKKFADTCKTKKICPSTGTPQPQYRLDGMKITAEFKVSADEEDS GMMSYGGERKIQVTAEMALKILKNISDEDCIALGLSPEHAHPSWYILQVLPVPPHPVRPS VAFDASTRSEDDLTVKLMEIVRMNKNLQKQEMNGAPQHVIGEFTELLQYHIMTFMDNTVA GQPRSLTRSGRPIKSISERLKGKNGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWS IALNMTYPEMVTPYNIERLRKLVENGPHPPPGETGAKYIIREDGQRLDLRFLKKESDKRL EYGYRVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDE MNMHLPQSLETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLLASRLMTKRDTFIKKDVF MNILMWLENWDGKVPKPAILKPEPLWTGKQVFTMFLPDVSLTKQSAWAKDNDPHDFSVED TGVRIEKGELITGILCKKTLGSGGGGLIHVIWEEWGPTAARGFVSQVQWLLNYWLLQHGF TIGISDTIADDGTMNSINDTITKAKQDVKEVIALAQTNALELQPGMTMQQSFEQKVNQIL NKARDNAGNSAQGSLDDTNNVKMTVTAGSKGSFLNISQMIACVGQQNVEGKRIPFGFDGR SLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV KAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKIDTLRHDKEKFKRTFHLDPD EPNFGKGWMSEAQANDLANSVEKRALLEAEWEQLKLDRAELHKVMTTGDPSVHLPVNLKR IVWNAQKNYGLVKDTSAPGRERDELQAVNVIESVRSMLNGLTVVPGGDELSLEAQRNSTI LFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMALAPPGDGIGTVAAQSIGEPA TQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLTVALRKDLAGDRAMAKNVQA SLEYTTLHSVAAVSEIYYDPDPTDTVIEEDKEFVRAYYEMPDEEVDPARMSPWVLRIELN REMMVDKKLLMADVAERINEDFQDDLSCIFNDDNSEKLIVRIRIMNSELEKEQGASQTED EVFLKRLEAQLLNSLALRGIPDIKKVFIREANTMGLDPETETYAKKSEWMLDTEGVNLLE VMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNALLKELRGVIEFDGSYVNYRHLAILVEVM TYRGHLMSITRHGINRVETGPLMRCSFEETVDILMEAAAFAERDRMSGLSENIMLGQFCP LGTGEFGLHLNEDVLKEAVDLDLTTHSADALGAGTTPARGTTPGGVGSASPSFLLSPQAH ASPFDDTMRFSPYTEGGGGGGGGDGMGFSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTS PAPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSVGLSDVENAPTRSPTSPQYSPTEG AFSPMETTEKEEEE NT seq 5085 nt NT seq  +upstreamnt  +downstreamnt atgtccgtgatcgatcggttcccgcactccaccgcggagcttcggcgggtgaaggcggtg cagttcggcgtcctgagtcccgaagagatccgcaagatgtccgtgtgcgaggtcgagacc gcggagacgtacgaaaaaggccgaccgaagcgcggaggcttgtccgacccgaggatggga acgatggaccgcagcatgacgtgcgagacggacggcatggacagtaaggacacgccgggg tactttgggcacctggagctcgcgaagccggtgtaccaccacgggttcatcaataacgtc gtcagagtgctgcgctgcgtcgggtactcgagctcgaagcttcttctggacaagaacgac gacccgcggttcgtggagatcatgaagatccggaacccgaagcatcgactgaagaagttc gcggacacgtgcaagacgaagaagatctgcccgagcaccgggacgccgcagccgcagtac cgcctcgacggcatgaagataaccgcggaattcaaggtatcggcggatgaggaagactcg gggatgatgtcctacggcggcgagcgcaagatacaagtcaccgcggagatggcgctgaag atattaaagaacatcagcgacgaggactgcatcgcgttgggtttatcccccgagcacgcg cacccgtcgtggtacatcttacaggtgctgccggtgccgccgcatccggtgcggccgtcg gtggcgttcgacgcgtccacgcgctcagaggacgacctcacggtgaaactcatggagatc gtgcggatgaataagaacctgcagaaacaggagatgaacggcgcgccgcagcacgtcatc ggcgagttcacggagcttctgcagtatcacatcatgacgtttatggacaacaccgtcgcg ggacagccgaggtcgctcacgaggagcggtcgcccgatcaagtccatctccgagcgtctg aagggtaagaacgggcgcattcgcgggaacctcatgggcaagcgcgtggacttctccgcg cgcacggtgatcaccccggacccgaacttgatgctcgacgagctcggcgtcccgtggagc atcgcgttgaacatgacgtacccggagatggtgacgccgtataacatcgagcggcttcgg aagctcgtggagaacgggccgcacccgccgcccggggagacgggggcgaagtacatcatc cgcgaggacgggcagcggttggacttgaggttcctgaagaaggagtccgataagagactg gagtacggctacagggtggagcggcacatgatcaacggggattgcgtgctgtttaaccgg cagccgtcgctgcacaagatgtccatcatgggtcaccgcgtccggatcatgccgtactcg acgttccgaatgaacatctccgtgacgccgccgtacaacgcggacttcgacggcgacgag atgaacatgcacctgccgcagtcgttggagacgagggcggaggtgcaggagctcatgatg gtgccgaagatgatcgtgtccccgcaggcgaacaagccggtgatggccatcgtgcaggac accctcctcgcgtcgcgcttgatgacgaagcgcgacacgttcatcaagaaggacgtgttc atgaacatcctgatgtggctcgagaactgggacgggaaggtgccgaagccggcgatcttg aagcccgagccgctgtggacggggaagcaggtgttcacgatgtttcttccggacgtgtcg ctcacgaaacagagcgcgtgggcgaaggataacgacccgcacgacttctccgtggaggac acgggcgtccggatcgagaagggcgagctcatcacgggcatcttgtgcaagaagacgttg ggatcaggcggcggcgggctgattcacgtgatttgggaggagtggggaccgaccgccgcg cgcgggttcgtgtcgcaagtccagtggctcttgaactactggctccttcagcacgggttc acgatcggcatctcggacacgatcgcggacgacggcacgatgaactcgatcaacgacacg atcaccaaagcgaagcaggacgtgaaggaggtgatcgccctcgcgcagacgaacgcgctc gagctccagccggggatgacgatgcagcagtcgttcgagcaaaaggtgaaccagattttg aacaaggcgagagacaacgcggggaactccgcgcaaggctcgctggacgacacgaacaac gtgaagatgaccgtcaccgcggggtccaagggatcgttcttgaacatctcgcagatgatc gcgtgcgtcgggcagcaaaacgtcgaagggaagcggatcccgtttggattcgacggtcga tcgttgccgcacttcaccaaggacgactacggcccggagagccgcgggttcgtcgagaac tcgtacctcagagggctcacgccgcaggagttcttcttccacgccatgggcggccgcgaa gggctcatcgacaccgcggtgaagacgtccgagacggggtacatccaacgccggctcgtg aaggcgatggaggacatcatcgtcaagtacgacggcaccgtgcgaaactccgccggggac gtgattcagttcctctacggcgaagacggcatggacgcgacgtacgtggagtcgcagaag atcgacacgctgaggcacgacaaggagaagttcaagcgaacgttccacctcgacccggac gagccgaactttgggaaaggctggatgtccgaggcgcaggcgaacgacctcgcgaacagc gtggagaaacgcgcgcttctcgaggcggagtgggaacagctcaagctcgaccgcgcggag cttcacaaggtgatgacgaccggggatccgtccgtgcacctcccggtgaacttgaagcgg atcgtgtggaacgcgcagaagaactacgggctcgtgaaggacacttccgcgcccggtcgg gagcgcgacgagctccaagccgtcaacgtgatcgaatccgtccggagcatgctcaacggc ctcaccgtcgtgccgggcggggacgagttatccctcgaggcgcagaggaacagcaccatc ctgttcttcgcgctcgtgcgatcgacgctcagcgcgaagcgcgtcatgaaggacttcaag ctctcccccgcggcgttcaactgggtcgtcggcgaggtcgagtcccggttcaagatggcg ctcgcgccccccggggatggcatcggcaccgtcgccgcgcagtccatcggcgagcccgcg acgcagatgaccctcaacacgttccacttcgccggtgtatccgcgaagaacgtgaccctc ggcgtcccgcgtctgaaggagatcatcaacatcgcgaagaagatcaagacgccgtcgctc acggtggcgctgcgtaaggacctcgcgggcgaccgcgcgatggcgaaaaacgtgcaagcg agcttggagtacacgacgcttcacagcgtcgccgcggtgagcgagatttactacgacccg gaccccacggacacggtcatcgaggaggacaaggagttcgttcgcgcgtactacgagatg ccggacgaggaggtggacccggcgcggatgtctccgtgggtgctgaggatcgagctcaac cgcgagatgatggttgataagaagctgctcatggcggacgtcgcggagcgcatcaacgaa gacttccaggacgacctgtcgtgcatcttcaacgacgacaacagcgagaagctcatcgtg cggatccgcatcatgaacagcgagctcgagaaggagcagggcgcgagccagaccgaggac gaggtcttcttgaagcgtctggaagcgcagctgctcaactcgctcgcgttgcgcgggatt ccggatatcaaaaaagtcttcatccgcgaggcgaacacgatgggcctggacccggagacg gagacgtacgcgaagaaatcggagtggatgctcgacaccgagggcgtgaacctcctcgag gtgatgaaccacgaggacgtggacttcacgcggacgacgtcgaaccacctcatcgaggtg atccaggtcctgggcatcgaggcggtgcgaaacgcgcttctgaaggaactcagaggcgtc atcgagttcgacggctcgtacgtcaactaccgccacctcgcgatcctcgtcgaggtgatg acgtaccgtgggcacttgatgtcgatcaccaggcacgggatcaaccgcgtggagaccggg ccgctcatgcgctgctccttcgaggagacggtggacatcttgatggaagccgccgcgttc gcggagcgcgatcgcatgtccggtctctccgagaacatcatgctcgggcagttctgcccg ctcgggacgggcgagtttggcctgcacctgaacgaagacgtcctgaaagaggccgtggac ttggatctcaccacgcactccgcggacgctctcggcgcggggacgacgccggcgagaggc acgacgcccggcggggtggggtccgcgtcgccgtcgtttttgttatccccgcaggcgcac gcgagtcccttcgacgacacgatgcggttttcgccgtacaccgagggcggaggcggcggc ggcggcggcgatgggatggggttctcgccgacgtctcccgggtacagcccgacgagtccg gcgtacagcccgacgagtccggcgtacagcccgacgagcccggcgtacagcccgacaagc ccggctccgacgtcgccggcgtacagcccgacctctccggcgtacagcccgacgtcgccg gcgtacagcccgacgtcgccggcgtactcgccgacgtctccggcgtacagcccgacgtcg ccggcgtacagcccgacgagcccggcgtattcgccgacgtctccggcgtactcgccgacg tcgccggcgtattcgccgacgtcgccggcgtacagcccgacctctccggcgtacagcccg acctctccggcgtactcgcccacgagtccgcagtattcgcccacttccgtgggcttatct gacgtcgaaaacgctccgacgcggtcgcccacctcgccgcagtactcgccgacggagggc gcgttctcgccgatggagacgacggagaaggaggaagaagaataa

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