Methanobrevibacter ruminantium: mru_0445
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Entry
mru_0445 CDS
T01166
Symbol
dnll
Name
(GenBank) ATP-dependent DNA ligase DnlI
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mru
Methanobrevibacter ruminantium
Pathway
mru03030
DNA replication
mru03410
Base excision repair
mru03420
Nucleotide excision repair
mru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
mru_0445 (dnll)
03410 Base excision repair
mru_0445 (dnll)
03420 Nucleotide excision repair
mru_0445 (dnll)
03430 Mismatch repair
mru_0445 (dnll)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mru03032
]
mru_0445 (dnll)
03400 DNA repair and recombination proteins [BR:
mru03400
]
mru_0445 (dnll)
Enzymes [BR:
mru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
mru_0445 (dnll)
6.5.1.6 DNA ligase (ATP or NAD+)
mru_0445 (dnll)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
mru_0445 (dnll)
DNA replication proteins [BR:
mru03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
mru_0445 (dnll)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
mru_0445 (dnll)
DNA repair and recombination proteins [BR:
mru03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
mru_0445 (dnll)
NER (nucleotide excision repair)
Other NER factors
mru_0445 (dnll)
MMR (mismatch excision repair)
Other MMR factors
mru_0445 (dnll)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Polysacc_synt_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADC46296
UniProt:
D3E0Q0
LinkDB
All DBs
Position
628105..629757
Genome browser
AA seq
550 aa
AA seq
DB search
MKYEELVNVYEALGATTKRLEKTEILADFLKTVELEDLQKITLMALGRVFPPWSEEEQGI
GDKLVMKAVGDAVGVSVAVVEDAIRDEGDIGAAAEKLYGKKTQMTFFSQPLTVNFVYNQL
RKLAKITGNRSTAKKISNILELLSSASALEAKYICRTILEELRIGVGEGIIRDAISQAFG
VDKALAERAHMLTNDLGLVAKVAKEEGEDGLKKLSLIPGRPVKPMLAQLSEGIEISINEM
GCALCETKYDGIRMQVHKKDDEITIFTRRLENVTMALPEAVDLIREAFPDEDFIAEGEII
AIRDGKPTTFQNILQRVRRKHNIEEAMEKVPIKIYLYDLLYFKEPTIDEPIIKRREILES
VVDCSNPNLALSSLVKVGPDNIDDAVDLFNKSIEGGHEGIMIKDCDEPYIPGIRGKKMLK
LKAEPETLDAVVIGGVKGIGKRGDFIGSYVIALRDENDQLQPIAHVGTGLSDDDLANLTE
KMEALKITEKGTRITVHPKIVFEIAYSEIVKSPEYSAGYSLRFPVVKRIRDDKGVDDIDT
IERLESMFKG
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgaagaacttgttaatgtttatgaggcattaggtgcaactacaaaaagatta
gagaaaacagagatattggcagattttcttaaaacagtggaactagaagatttacagaag
attactttaatggctttaggtcgtgtttttcctccttggagtgaagaggaacagggaatt
ggcgataagcttgttatgaaagctgtaggagatgctgtaggagtctctgtagcagtagtt
gaagatgcaatcagagatgaaggagacattggagcagctgcagagaagctttacggcaaa
aagactcaaatgactttcttctcacagcccttgacagttaactttgtctataatcagctg
agaaaattggccaaaataactggaaacaggtccacagccaaaaagatctcaaacattttg
gaattattgtcatctgcatctgcacttgaagctaaatacatttgccgaaccatattggaa
gaacttagaatcggtgtaggtgaaggaatcattcgtgatgcaatttcacaagcctttggt
gttgataaggcacttgctgagagggcacatatgcttacaaatgatttaggccttgttgca
aaggttgcaaaggaagaaggtgaagatggccttaaaaaactttcattaattccaggaagg
cctgtcaagccaatgcttgcccaattgtctgagggaattgaaataagcataaatgaaatg
ggttgtgcactttgtgagacaaaatacgatggaattcgtatgcaggttcataagaaggat
gatgagattacaatattcactcgcagactggagaatgtgactatggcccttccagaggca
gttgacctaatcagggaagctttcccagatgaggacttcattgcagaaggtgaaatcata
gcaatccgtgatggaaagccgactacattccagaacatccttcagagagtcagaagaaaa
cataatattgaagaagctatggaaaaggttcctattaagatttatctatatgatttgctc
tactttaaggagccaaccattgatgagccgataatcaagcgtcgtgaaatattggaaagt
gtagtggattgctcaaatcctaatttggccctcagttcccttgtcaaggtaggtccagat
aatattgatgatgcagtggatttattcaataagtcaattgaagggggacatgaaggaatc
atgattaaagactgcgatgagccttatattccaggaattagaggcaaaaaaatgctaaag
cttaaggcagagcctgaaacattggatgcagttgtaatcggtggagttaaaggaataggc
aaaaggggagactttataggctcttatgtgattgcccttcgagatgagaatgaccagttg
cagcctattgctcatgtaggaaccggtctttcagatgatgacttggcaaatctcactgaa
aagatggaagctcttaagataactgaaaagggaactagaataactgttcatcctaagata
gtctttgagatagcttatagtgagattgtaaagagtccagagtatagtgcaggttattca
ttgcgtttccctgtagttaaaaggataagggatgataaaggcgttgatgacattgataca
attgaaagattagagtctatgtttaagggatag
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