Micropterus salmoides (largemouth bass): 119883109
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Entry
119883109 CDS
T07309
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
msam
Micropterus salmoides (largemouth bass)
Pathway
msam03440
Homologous recombination
msam03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119883109 (brip1)
03460 Fanconi anemia pathway
119883109 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msam03400
]
119883109 (brip1)
Enzymes [BR:
msam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119883109 (brip1)
DNA repair and recombination proteins [BR:
msam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
119883109 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
119883109 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
119883109
NCBI-ProteinID:
XP_038549559
LinkDB
All DBs
Position
Unknown
AA seq
1121 aa
AA seq
DB search
MSSMEYTIGGVKIHFPCKAYPSQLAMMNSIVRGLNYGQHCLLESPTGSGKSLALLCSALG
WQQAQFAKLQEGGRLVEDKSQSDKNCGDFKKSDVTCQCVCHSEANGTSAVAAAAAAKPVV
VDLTVSPCKETVQPPPPAPEHMPLPEEPQPKKKSIASRLSEKFQSDRSSAREEDDDFQPD
RKRIRSAEHKSRKRQRLEQGVVFIDDEPELENEPSGPQSWTTEPNSQAAGLSSACCSPEP
CSQCLCASTKQGVKDKDNDGKKKIPKIFFGTRTHKQITQIAHELKRTVYSSVPMTILSSR
DHTCVNPEVAPHSNRNERCKDLLDAKDGRSCHYYHGVQRMRDQYMLQKVHGMHGAWDIED
LATLGKRLRSCSYYAARELMQGASIIFCPYNYLLDPLIRESMDINLAGQILVLDEAHNIE
DCARESASFTLNLNSLLMSRDELDGMVNSNIRRSKHEPLRNFCYSLINWIQESQSLMSER
GYESASKVWSGKDILPIFHSLGITADTFSNLKQNLAAVLEKEERVGLVNGKEDMVPVPTI
SSATSTVLKSLFMVLDYLYRDNSRFAEDYRVALQKSYAWTNQVPPDVPDAQGFLVRPHQR
QRQRQSIRVKAEILTLSFWCLNPAVAFSDLSGTVHSIVLTSGTLSPMGSFSSELGVKFSI
QLEANHVINKSQVWVGTIGAGPQGRKLCATFQHTETYAFQDEVGALLLHVCQVVAKGVLC
FLPSYKMLDKLRDRWTNTGLWEKLEQQKTVITEPRGGGKGDFDELLHTYYDAVKYCAERD
GALLIAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLRG
HQWYEIQAYRALNQALGRCIRHRNDWGALILVDDRYRNNPNKYITGLSKWVRQLVQHHDT
FTNAMKSLVAFCQVQQKVEAAPLSSVITHLPETVEREDLPKASEPWTPGSCVKPPEAQQD
TSPSTFSAFSHKQLKAEQEKEYLKTIHSPPTKPLVQTPPSKKPMYHIFTSRKTTNGKQLT
ETANHSEHQKKQHISSTQQKTDVSCLKQGAGDRSTEIKVEPHSLAPKLSPVTPPSCEREP
PSADSQEEDEDEEDQTVFFTPELFEGEGDEGSPQKETKTKY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcaatggagtacaccattggaggggtgaagatccacttcccctgcaaggcttac
ccatcccagctggccatgatgaattcaattgtacgagggttgaactatgggcagcactgt
ttgctggagagtcccacaggcagcggaaagagcctggccttgctctgttcggccctggga
tggcagcaggctcagtttgctaaactgcaagaaggaggaagacttgtggaggacaagagc
cagtcagataaaaactgtggagactttaagaagtcagatgtcacctgtcagtgtgtgtgc
cacagtgaagccaatgggacctcagctgtagctgcagctgcagcagccaaacctgttgtt
gtagacctcactgtgtcaccctgcaaagagactgtacagcctccacctccagcacctgaa
cacatgccgttgccagaggagccacagcccaagaaaaagtctattgcctctcgtctgtct
gagaagttccagtctgaccgaagttctgcccgcgaggaagacgacgacttccagccagat
aggaaacgcattcgctctgctgagcacaagagtcgtaaaagacagcgtctggagcaggga
gtggtatttatagatgatgagccggagctagagaatgagccttcaggacctcagagttgg
acaacagagcctaacagccaggcagctggtttgtcctcagcgtgctgctctccggaaccc
tgctcccagtgcctgtgtgcttcgaccaaacagggtgtgaaggacaaagacaacgatggc
aaaaagaagattcctaagatcttttttggcactcgcacacacaaacagataactcagatc
gcccacgagctgaagcgcactgtttactccagtgtgcccatgaccatcttatccagcaga
gatcacacctgtgtcaaccccgaggtggcacctcactccaaccgcaatgaacgctgcaag
gacctgctggacgccaaagatggcaggtcatgccactactaccatggtgttcagaggatg
cgggaccagtacatgctacagaaggtccatggaatgcatggagcctgggacattgaggac
ctggccacactgggcaaacggctccggtcatgctcctactatgctgcacgtgagcttatg
caaggcgcctccatcatcttctgcccgtacaactacctgctggacccattgatccgggag
agtatggacatcaacctggcaggccagatcttggtgctggatgaggcccacaacattgag
gactgtgcaagggagagtgccagcttcaccttgaacctcaacagtctgctgatgtccagg
gatgagctcgacggcatggtcaacagcaacatcagacgctccaaacacgagccactcagg
aacttctgctatagcctgatcaactggatccaggagagccaaagcctgatgtctgaacgg
ggatatgagagtgcctctaaagtttggagtgggaaggatatactgcccatctttcacagt
ctgggcatcactgctgacacctttagcaatctgaagcaaaacttggcagcagtgttggag
aaagaggagcgtgttggtttggttaatggtaaagaggatatggtgcctgtcccaaccatc
agctcagctacctccactgtcctcaaaagcctcttcatggtgctggactacctctacagg
gacaactccaggtttgctgaagactaccgggtagctctgcagaagagctatgcttggacg
aaccaggtcccacctgatgtccctgatgcccagggctttttagttaggccacaccaacgc
cagagacaacgccagagcatccgagtcaaggcagaaatcctgacactaagcttctggtgc
ctcaaccctgctgtggctttctctgacttgagtggcacagtgcacagcattgtgctgaca
tcagggaccctgtcacccatgggctccttctcctctgaacttggggtgaaattctccatc
cagctggaggccaaccatgttattaacaagtcccaggtttgggtgggcactattggtgca
ggaccccagggcagaaaactctgtgccacattccaacataccgaaacgtatgccttccag
gacgaggtgggtgcgctgctgctccatgtgtgccaggtcgtggccaagggtgtgctctgc
tttttgccttcttacaagatgctggacaagctgcgagaccgatggactaacactggtctc
tgggagaagctagaacaacagaaaactgtgatcacagagccccgcggcggtggcaagggg
gattttgacgaacttcttcacacgtactacgatgctgtcaaatactgtgcggaaagagat
ggtgcactgctgattgctgtctgtaggggtaaagtgagtgaaggactagactttaccgat
gacaatgccagggcggtggtcaccattggcattcccttcccaaacatcaaagacctccag
gtggaactgaagatgaagtacaatgatcagcactgcaagtccagaggtcttctccgaggc
catcagtggtacgagattcaggcctacagagctctaaaccaggccctggggaggtgcatc
cgccacaggaatgactggggtgcccttattctagtagatgaccgttacaggaataatccc
aataagtacatcacaggtctttctaaatgggtccgccagctcgtccagcatcatgacacc
tttaccaatgcaatgaagtctctggtagcattctgtcaggtgcaacagaaggtggaggcg
gcccctctttcatctgtcatcactcacttaccagaaactgtagagagagaggatctgcca
aaggcgtccgaaccatggacacccggctcatgtgtcaaaccgcctgaagcccagcaggac
acaagcccctcgaccttctctgctttttcacataagcagttgaaagctgaacaggaaaaa
gaatacttgaagacaatccacagtcctccaacaaagccccttgtgcaaacccccccctcc
aagaagcctatgtaccatattttcacctccagaaaaacaactaatggaaaacaactaacg
gaaacagctaatcattctgagcaccagaagaaacagcacatctcctccacgcaacagaag
actgatgtgtcttgtcttaaacaaggggctggagaccgttccactgaaatcaaagtggaa
ccacatagtctggctccaaagctttctccagtaacacctcccagctgtgaaagggaacca
ccctcagcagacagtcaagaggaagatgaagatgaagaagaccagactgtcttttttact
cctgaactttttgagggcgaaggcgacgaaggcagcccacagaaagagactaagaccaaa
tattaa
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integrated database retrieval system
