Methanobrevibacter smithii: Msm_0197
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Entry
Msm_0197 CDS
T00539
Name
(GenBank) DNA-dependent RNA polymerase, subunit E, RpoE
KO
K03049
DNA-directed RNA polymerase subunit E' [EC:
2.7.7.6
]
Organism
msi
Methanobrevibacter smithii
Pathway
msi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Msm_0197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msi03021
]
Msm_0197
Enzymes [BR:
msi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Msm_0197
Transcription machinery [BR:
msi03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Msm_0197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
ABQ86402
UniProt:
A5UJM4
LinkDB
All DBs
Position
complement(190086..190643)
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AA seq
185 aa
AA seq
DB search
MTKIEDTVRIPPYRFDDPLEEVAIQTLNDTYNGRLDKKLGLLICVNEIEEIGEGRLIMGD
GASYHNVVFNAIFFKPEQQEVIDGEVIEIAEFGAFVRIGPMDGLVHVSQVTDDYINYDSK
RGALLAKESNKTLDEGDLVRTRIVAISLKDNSTKNTKIGLTMRQNNLGRFEWIEEAKNKN
KKAKS
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaattgaggatactgtaagaataccaccttatagatttgatgatcctcttgaa
gaggtagctattcaaactttaaatgatacatataacggccgtttagataaaaaattaggt
ttacttatttgtgttaatgaaattgaagaaattggtgaaggtagactcatcatgggagat
ggagcttcttaccataatgttgtgtttaatgcaatattcttcaaacctgaacagcaagaa
gttattgatggtgaagtaatagaaatagctgaatttggtgcttttgtcagaattggacct
atggacggtttggttcatgtttcccaagtcactgatgattatattaattacgattctaaa
agaggagcactccttgcaaaagaatctaataaaactttagatgaaggagatttagttaga
acaagaattgtagctatcagtcttaaagataactctaccaaaaatactaaaataggtctt
accatgagacaaaataatttaggtagatttgaatggattgaagaagctaaaaataaaaat
aagaaggctaaatcatga
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