Magnolia sinica: 131248865
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Entry
131248865 CDS
T09699
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
msin
Magnolia sinica
Pathway
msin03020
RNA polymerase
msin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131248865
09124 Replication and repair
03420 Nucleotide excision repair
131248865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msin03021
]
131248865
03400 DNA repair and recombination proteins [BR:
msin03400
]
131248865
Enzymes [BR:
msin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131248865
Transcription machinery [BR:
msin03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131248865
DNA repair and recombination proteins [BR:
msin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131248865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
MIF4G_like_2
Motif
Other DBs
NCBI-GeneID:
131248865
NCBI-ProteinID:
XP_058105340
LinkDB
All DBs
Position
6:complement(73140044..73157412)
Genome browser
AA seq
1834 aa
AA seq
DB search
MDIRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVQIEHSETMERGKPKPGGLSDPRLGTI
DRKLKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEDHK
FKQSQKIRNPKHRLRKVLDACKNKTKCEGGDDIEVRDQDLEEPVKKRRGGCGAQQPKLTV
EGMKMIAEYKATRKKNDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQIN
LIRTSAWHSEAETGFITPGDTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKREFDNVFRYEFDNANWNPSYMLTEHVEDLKTIREFRNVFDAEVQKLEADRYQ
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
GDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDAEFVKSYYEMPDEEV
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEGFKP
EIEWMLDTEGVNLLAVICHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAALYAETDH
LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPMSGTP
YHEGMSSPSYLFSPNARLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPVYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPPSAKYSPSLAYSP
SSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPSSPYSSGVGPDYSPSSPQY
SPSAGYSPTAPGYSPSSTSQYTPQMSNKDEGSSR
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggacatccgattcccgtactccccagcagaggtcgcaaaagtccgggtcgtccagttc
ggcatcctcagtcctgatgaaatccggcaaatgtcagttgttcagatcgagcatagtgag
acgatggagcgtggaaagccgaagcccggtggcctcagcgatcctcggcttggtaccatt
gatcgtaagctgaagtgtgaaacgtgcatggcgaacatggctgagtgccctggtcatttt
ggccaccttgagctcgccaagcccatgttccatatcgggttcttgaaaactgtgctctct
atcatgcgctgcgtctgctttaattgctctaaaatacttgttgatgaggaagaccacaaa
ttcaagcaatctcagaaaattagaaatccaaaacatcgactcaggaaggttttggatgca
tgtaagaataaaacaaaatgtgaaggtggtgatgatattgaggtccgagatcaagattta
gaagaaccggtaaagaagcgccgagggggttgtggtgctcaacagccaaagctcaccgtt
gaaggtatgaaaatgattgcagaatacaaggctacaaggaaaaagaatgatgatcaagaa
cagcttcctgaacctgtggaaagaaaacaacagctttctgcagaaagggttctaagtgtt
ctcaagcggataagtgatgaggactgcctactgttgggtttgaatcctaagtatgcccgt
ccggattggatgattttacaagtcctcccgattccccctcctcctgtgagaccttctgtg
atgatggatacgtcttctaggagtgaggatgacttgactcatcagttggcgatgattatt
agacacaacgagaatctgagaaggcaggagagaaatggagctcctgcccacatcatctca
gaatttgcacaattactgcaatttcacattgctacatattttgataatgagcttccgggt
cagccgagggctacacagaggtcaggacggcctatcaaatccatatgcagtcggcttaag
gctaaagaaggtcggattagaggcaacttgatgggaaagcgtgtggatttttcagcacga
actgtcatcacaccagatccgacaattaacattgatgaacttggagtgccatggagtatt
gctcttaatttaacatatccagaaactgtgacaccatataacattgagaggttgaaggaa
cttgtagaatatgggccccatcctcctcccggtaaaactggtgccaagtacatcattagg
gaagatggacagaggcttgatcttcggtacttgaaaaaaagtagtgatcatcatctggag
cttggttataaggtggagaggcacttgaatgatggggacttcgttcttttcaatcggcaa
cctagtcttcacaaaatgtctataatggggcatcgaatcaaaatcatgccatactcaact
tttcgcttgaatttgtctgtaacttctccatacaatgctgattttgatggggatgaaatg
aacatgcatgttcctcagtcatttgaaactagagcagaagtcttggagctgatgatggta
ccaaaatgcattgtctcgcctcaatcaaatcgccctgttatgggtattgtccaggataca
ctcttaggatgccggaagataactaaaagagataccttcattgagaaggatgtctttatg
aatatcttgatgtggtgggaggattttgatgggaaaatacctgctccaactattctgaag
cctagacctctttggacaggaaagcaagtgttcaatctgatcattcctaagcagataaac
ctcataagaacctcggcatggcactcggaagcggaaacaggatttatcactccaggagat
acacaagttagaatagagagaggagagctgcttgctggcactctctgcaagaagaccctt
gggacatctactggtagtcttattcatgtcatctgggaagaggttggtccagatgctgcc
cgcaaattcttgggccacacacagtggcttgttaactactggcttttgcagaatggattt
agtattggaattggggacacaattgcagatgcatcaactatggaaaaaattaatgaaaca
atatcgaaagcgaagaatgaagtgaaggaacttattaaggctgcccaagaaaagcagcta
gaggcagaacctgggcgaactatgatggaatcatttgagaacagggtgaaccaggtgctg
aataaggctcgtgatgatgctgggagtagtgcacagaagagcttatcagaaagtaacaat
ctgaaggctatggtgacagcaggatcaaagggaagttttatcaacatttcacagatgact
gcttgtgtgggacaacagaatgtcgagggtaaacgaattccttatggtttcattgatcgg
acgctaccacatttcaccaaagacgactatgggcccgaaagtcggggctttgtggagaac
tcatatctccgtgggctgactccacaggaattcttctttcacgctatgggtggtagggaa
ggtctgattgacactgcagtgaaaacatctgagacggggtatattcagaggcgtcttgtg
aaggctatggaagacattatggtcaaatatgacggtactgttaggaactcattaggggat
gtgattcagtttttgtatggagaggatggtatggatgctgtttggattgaatcacagaag
ttggattctctgaaaatgaagaagcgtgagttcgataatgttttcaggtatgaatttgac
aatgccaattggaatccaagttacatgttaactgaacatgttgaggatttgaaaaccatc
cgggagtttcgcaatgtttttgatgctgaagttcagaaactggaagcagatcgataccaa
cttggtacagagattgctactacaggtgataactcatggcctatgcctgttaacctcaag
aggcttatctggaatgctcaaaagacatttaaggttgacttgagaaggccatctgacatg
caccctatggagattgttgaagcagttgacaagcttcaggaaaggttaaaagtcgttcca
ggtgatgattttctgagcatggaagctcagaaaaatgcaacccttttcttcaacattctg
cttcgtagcacatttgccagtaagcgtgtgttgaaagagtacaggctaactcgtgaagca
tttgaatgggtaatcggtgagatagaatctcgattcttacaatcattggttgcaccaggt
gaaatgattggctgtgtggctgcccaatccataggtgagccagccactcagatgaccttg
aataccttccactatgctggtgttagtgccaaaaatgttactctaggcgttcctaggttg
agggaaatcataaatgttgcaaagaaaattaaaactccctcactttctgtgtacctaaag
cctgaagtcaacaagacaaaagagagggcaaagaatgtccagtgtgctttggaatacacc
actttacgcagtgtaacacaagcaactgaagtgtggtatgatccagatcctatgagcacc
atcatcgaagaggatgctgagtttgtgaagtcttattatgaaatgccagatgaagaagtt
gccccagagaaaatctctccttggctgcttcgcatagagttgaatcgtgaaatgatggtg
gataaaaagttgagcatggcagacattgcggagaagattaaccttgagtttgatgatgat
ttgacttgtatatttaatgatgacaatgctgagaagctaattcttcgtatacgtatcatg
aatgatgaagctccaaagggggagatgcaagatgaatctgccgaagatgatgtcttcctc
aagaagattgagagcaacatgttgacggaaatggccctacgaggcatcccggacatcaac
aaggtgtttatcaagtctggaaagataaataagtttgacgagaatgaagggtttaaacct
gaaatagaatggatgttggacacagaaggtgtcaatctgttggctgttatctgtcatgaa
gatgttgatgcaactaggacaacaagtaatcacttgatcgaagtgattgaagttcttgga
attgaggctgtacgtcgatctctgctggatgagttacgggtggtcatatcttttgatggg
tcttacgtgaattacaggcacttggctattctatgtgacactatgacctaccgtggtcat
ttaatggccatcacccgccatggcattaatcggaatgacactgggccaatgatgagatgt
tcatttgaggaaactgtggacattcttctggatgctgctttgtatgctgaaacagatcat
ctcagaggtgtcaccgaaaatattatgcttgggcagcttgcacccattggcacaggggac
tgtgccttgtatttaaatgatcagatgctgcagcaagcaattgaacttcagcttcctagt
tatatggagggtttggattttggcatgacaccttcccgttcacccatgtctggaactcca
tatcatgaaggcatgtcgtcaccaagctatttgtttagcccaaatgcccgtttgtcaccc
attacagatgctcagttttctccttatgttggtgggatggccttctctcccacttcatcg
ccaggatacagtccatcatctccaggctacagtccatcatctccaggatatagtcctaca
tctcctggttatagtcccacctcacctggatacagtcctacatcgcctggttatagtccc
acttcacctacatacagccctagctctccaggctatagtcctactagtcctgcatattct
cctacaagcccatcttactcccctacttcacccagctacagtccaacatcccccagctac
agccccacctcaccaagttacagccccacctcgccaagttacagccccacctcaccaagc
tacagccctacttctccagtttatagtccgacttccccagtctatagccccacctctcct
gcatacagccccacctcgccatcatacagccccacctccccttcatacagccccacctca
ccaagctacagccccacctcgccttcatacagccccacctcgcctgcatacagtccaact
tctcctggttatagcccaacatcgccaagctacagcccaacatctccgagctacagtcct
acttctccaagttacaatcccccttctgcaaaatacagtccatcgctggcgtactcccca
agcagtcccagattgtcaccatccagtccttacagtccgacatctccaaattacagccca
acttcaccatcatattcgccaacatccccatcatattctcctgcaagccctacgtatagt
cccagcagtccatacagttcaggtgttggcccagattacagcccaagttctccacagtac
agtcctagtgctggctactcacctactgcaccggggtactcaccgtcatccaccagccaa
tacactccgcagatgagcaataaggatgagggcagcagtcgctga
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integrated database retrieval system
