Magnolia sinica: 131251320
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Entry
131251320 CDS
T09699
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
msin
Magnolia sinica
Pathway
msin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131251320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msin03019
]
131251320
Enzymes [BR:
msin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
131251320
Messenger RNA biogenesis [BR:
msin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
131251320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
AAA_24
AAA_22
SRPRB
AAA_7
MMR_HSR1
FtsK_SpoIIIE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
131251320
NCBI-ProteinID:
XP_058107960
LinkDB
All DBs
Position
7:complement(46306849..46393935)
Genome browser
AA seq
426 aa
AA seq
DB search
MATGTSRQFKLAKESELRIEVGMETSLRLRLLSGTAEIFGTELPPENWLTFPPRHKFAIF
TWNGATIEVNGTSEVEYVADETPMISYVNVHAVLEGRRARAKASSTNGTDSSQGPRVMVV
GPTDSGKSSLAKMLLSWASKQSWKPTFVDLDIGQGSITVPGCIAATPIEMPIDPVEGIPL
EMPIVYFFGHTTPSANADLYKVLVKELAQTLERQFAGNAEARAAGMVINTMGWVEGVGYE
LLLHAIDAFNANVVLVLGQEKLCSMLKDVLKSKPNLDIVKLHKSGGVVPRNTKFRQKARS
YRIREYFYGLVNDLSPHSNVANFSDVFLFKIGGGPQAPRSALPIGAEPAADPTRLVPVNI
NRDLLHLVLAVSYAKEPDQVISSNVAGFIYITDIDVQRKKITYVAPCPGDLPSRFLIVGT
LTWLET
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggctacagggacgagcagacagtttaagctggccaaggaaagcgagctgagaatagaa
gtaggcatggaaacctcacttcgactgcgtctcctctctggcactgctgagatctttgga
accgagctccctcccgaaaactggctcaccttcccccctcgtcacaaattcgccattttc
acttggaatggtgcaacaattgaagtaaatgggactagtgaagttgaatatgttgctgat
gagacacctatgataagctatgtaaatgtccatgctgtattggaggggcgaagggctcgt
gcaaaagcgtcctctacaaatggcacagattcttctcagggccccagggtgatggtagta
gggcctactgattctggtaaaagtagcttggcaaagatgcttcttagctgggcatctaag
cagagttggaaacctacttttgtggatttggacattggtcagggatctataacagttcct
ggatgcattgcggctactccaattgaaatgccaatagatccagtggaaggaatacctctt
gaaatgcccattgtttatttttttgggcacacgactccaagtgccaatgcagacctgtat
aaagtgcttgtgaaggagcttgctcaaacccttgagagacagtttgctggtaatgctgaa
gctcgagctgcaggcatggtaatcaacaccatgggatgggtggaaggtgttggatatgag
ttgcttctacatgcgattgacgcattcaatgcaaatgtagttttggttttgggtcaggag
aaactttgcagcatgctaaaagatgtactcaagagcaagccgaatttggatattgtgaaa
cttcacaaatcaggaggtgtggttccaagaaatactaagttccgccagaaggccagaagc
tataggataagggaatacttttacggtctggtgaatgatctctctcctcattccaatgtc
gcaaacttcagtgatgtttttcttttcaaaattggtggtgggccacaggcaccacgttca
gctcttcccattggtgcagagcctgctgcagatcctacacggctagtacctgtgaatatt
aaccgtgacttgctccatttagttctggctgtttcatatgccaaggaacccgatcaagtt
atttccagtaatgttgctgggttcatctacatcacagacatcgacgtccagaggaagaag
atcacgtatgttgcgccgtgccctggtgatctcccaagcaggtttttgatagttggaacc
ttgacgtggctggaaacctag
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