Mycoplasma suis KI3806: MSUIS_06550
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Entry
MSUIS_06550 CDS
T01442
Symbol
rpoBC
Name
(GenBank) DNA-directed RNA polymerase subunit beta and beta\'
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
msk
Mycoplasma suis KI3806
Pathway
msk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSUIS_06550 (rpoBC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msk03021
]
MSUIS_06550 (rpoBC)
03400 DNA repair and recombination proteins [BR:
msk03400
]
MSUIS_06550 (rpoBC)
Enzymes [BR:
msk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSUIS_06550 (rpoBC)
Transcription machinery [BR:
msk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSUIS_06550 (rpoBC)
DNA repair and recombination proteins [BR:
msk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSUIS_06550 (rpoBC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb1_4
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CBZ40748
UniProt:
F0V267
LinkDB
All DBs
Position
complement(537979..545910)
Genome browser
AA seq
2643 aa
AA seq
DB search
MSYKLKEVNSVVKRIDFSKYPTADWSLPNLRGIQIDSYKKFLESGIQELISRYFPITSAS
GNTQVFLDGIEITEVDVTEEEAVNSSKSYQRSIYLKLRLVSKYSEGKSKLSTSRIFFGNM
PIFSSSSNFIINGIEKFVICQIVRSPGLYVLNKAQIRLSNSRKRTQEGIVCELLPVKGVL
LLFHLPNPSDKKDGGEESTSIKLIARNTSGNNAYSFPVTVFLKALGISTKTITSLFEKNP
ELMRAFSQESFNPSGALNDSLVVSILSEISSAKGAQKMRDLSKGWIRETLYSLCMRYTEA
EREGASRAVKEDILEKIAIELAAKQLISSFSINTEIARREIHSYQELLWSYFYDKNYYHI
LPAGRYKLNYKLSVWERMRNKYLAQDICDLSGNVVFAKDTFMDFEKLSEFKEAAIAKKLN
IRHKFDITRTFDDIEGRYRDFDVIEYEKVSIYSVGLDSEVITLLGTPYLEDEKPLNPSDA
LAIISYMLHLKKKVGEYDDIDNLGNKRLKLIDELLKDRIAIALTRIQKFSVDRMNSLESK
LSYFSLQDGELEDYFSLSSIMNTKPFQIVIKEFFNSHQLVQFLDQQNVLSEITNKRKISA
MGPGGIKREDPNLSIRDVHYSYYGRVCPIETPEGMNIGLIMALASLSRVDKYGFLNTPYY
RVKNGVIQKDQKVWLNSIQERSFCIAEATTERDENGRLIGPVTVRRDEEVESVDPEEVSY
IDVDCTQITSISTSLIPFLEHDDANRALMGANMQRQAVPLISPKSPIVATGVESRIARDS
GVVIQAEDDGIITYMDSSQIRVKYRGELGEKTYSLQKFIKTNQNTCKNQLVVPRNSREVK
KGDILVDGHAIQNGELALGQNILVAFTSWYGYNYEDAIILSSRLVQENVYTSLHIQEYTV
NCMRTKIGDEEITRFIPGCTAEEKKYLDEDGVILVGAAVKEGDILVGKTSPKAMGEVTPE
EKLLQAIFSEKAKSVKDSSLRLPSGSEGIVTKILRYSAAKGDRLGDDVLETIKIFVTSKR
NIQIGDKMVGRHGNKGIVSKVVPVEDMPYLEDGTAVDILLNPLGVPSRMNIGQILESYLA
FSARKLVFKKILEAFFDSSLESCDTLFSRSKVELESLGKVIKSYLESKNIKSREEALSKL
TQLDFSIILSHAGIKYDELEIKVLTPIFAGCKNSDLINIMADAGVDFKHHNGRFTLYDGR
TGEKFKDPISVGIIYMLKLDHMVDDKIYARSVGPYSKITQQPLGGKCQNGGQRFGEMEVW
ALEAYGAAHNLRELLSLKSDDIQARNLIYYSIIKGQALPKPTISESFKLLVKKLQALGLR
VNISFGAAREVLGFDDYLARRMKLNEKIQLMSWNNQSVREDQEKYKLGDSNFAQESELED
LTINGFQVSITSPEYLLSLSRGEVKSAETINYKTFKPEKGGLFCEAIFGPVKDYECFCGK
YKRVRYKGKYCEKCGVCITESIVRREWMGHIALACPIAHIWMIKELPLPSKVSLMLGIKY
KSVEEVVYFVNYIVIEIKNSENKRYSGIFERLELVNVSDQNSPLRSLFKIRKLLRLIYEE
IAEKEGTDSVSYEQGRVYYKALSSSNLPFSLHDVFEYIYKWSGIKIGTGAEAIYELLKKV
DLDSLEHSILKQLKGRKKEVSSSNEPKYKKLLSRLEVVRWFKQSGNRPEWMILKNILVLP
PNLRPIVQLDAGRFTTSDLNIFYRRIIIRNERLKKILSLNVTSIIANNEKRMLQEAVDSL
IDNSSRKKPLLAKDKHPLKSLTDHLKGKQGLFRQNLLGKRVDYSGRSVVVVGPELKLHQV
GLPILIVLKLFKPFIIRELIRSYIDEETGERVQIAQNIKVAEKIIEDQEDVLWPVVQKVI
KERPVLLNRAPTLHSLGIQAFEPIIVEGKAICLHPLVTTAFNADFDGDQMAVHLPLSEEA
VKEARDILLAPHHVLAPKNGQPILMPSQDMVLGLYYLTNTRKGAKGEGRLCSSVEEVKYL
YEIGEIDLNAFILVGTSIFSNKKWNKKGLLITTPGKVIFNLALPSDYRYVNDSSEEGVSE
EDIVELGVDYTEVVANIKEKAPFSKKVMQTIIEEVYEGYPLEKTSEMLDNIKTLGFEFST
KSCITISPFDIPRFKDSFKEDLIVEAEKKVREQKEFFELGMITDDERYQRVINLWSEVKD
KVSEQVKSWFRGEEYRDNPMAIMEKSGARGSLSNFVQLSGMRGLMNRSYNYGQSNDSKII
KDIIEVPIKNSFIEGLNMIEFFNSSYGSRKSMADTAVKTAKSGYMTRKLVDASQEVVVRS
IDCNPKKGVLIRAIKAEGSDSMVKTLEERLRYRCAFKDIVCPQTGEVLCAEGEYITPKIA
KKIQDLGFEEVEVRGAFTCEQKRGVCQKCFGYDLKTKKPVKVGTAVGIIAAQSIGEPATQ
LTMRTFHSGGVAGESNITQGFERLRQLFDGIKPHSWEQAIISDIKGVVKSIVRRGNSRII
EIKGPLGKRVYEVGMAIKVRVQVGEEVNVGTLITEGLLSLDEIKRSLGIEKTRTYMVEEV
LKVYWMHGLDLSDKYVEVIVNQMTNKWKVLESTNTKVSVGEILEGENFKNRIDNIIIEKE
EMPVAEIEVLNLEDVPMRSGSFLAAAAFQDTRKVLTDAAVKGEQDSIMSLKSNLIVGELI
GLK
NT seq
7932 nt
NT seq
+upstream
nt +downstream
nt
atgagttacaagttaaaagaggtaaattctgtagtaaagagaattgacttctctaaatat
cctacagctgattgatctctgccaaaccttagaggaatccaaattgattcctataagaag
ttccttgaaagtggaattcaagaacttatttcaagatacttccctattacatcagcttct
ggaaatacacaagtattccttgatggaatagaaataacagaagttgatgtaacagaagaa
gaagctgttaatagctctaagagctatcaacgatctatatatctaaaacttagattagtt
tctaagtatagtgaaggaaagagtaagctatctacctcaagaatcttctttggtaatatg
cctatcttctcttcatcttccaatttcattattaatggaattgaaaagtttgtaatctgt
caaattgtaagatcaccaggtctatatgtgcttaataaagcacaaataagactttcaaat
tctagaaagagaactcaagaaggaatagtttgtgaacttcttccagttaaaggagttctt
ctattattccatcttcctaatccttctgataagaaagatggaggagaagaatccacttca
attaagttaattgcaagaaatacttcaggtaataatgcttactcattccctgtaacagta
ttcctaaaagctcttggtatttcaacaaagacaattacgtctttgtttgaaaagaatcca
gagcttatgagagctttctcacaagaaagctttaatccttcaggagcacttaatgattct
cttgttgtatctattctttctgaaatctcaagtgctaagggagcacaaaaaatgagagat
ctatctaagggatgaattagagaaactctttactctctgtgtatgagatacacagaagct
gaaagagaaggagcttctagagctgtaaaagaagatattcttgagaagatagctattgaa
ttagctgcaaagcaattaattagctccttctcaattaatacagaaattgctagaagagaa
attcactcctatcaagaattactgtggtcatacttctatgacaagaattattaccacatt
cttccagcaggaagatacaaacttaactacaaactttctgtatgagaaagaatgagaaac
aaatatcttgctcaagatatttgtgacttatcaggtaatgttgtttttgcaaaggacaca
tttatggactttgaaaaactatctgaatttaaagaagcagctattgccaagaaactaaat
attagacataagttcgatatcactagaacatttgatgatatcgaaggaagatatagagat
ttcgatgtaatcgaatatgaaaaagtatctatttactcagtaggactagatagtgaggtt
attactcttctaggtactccttacctagaagatgaaaaacctctaaacccttctgatgct
ttagctattatctcctacatgcttcacctaaagaagaaagtaggagaatatgatgacatc
gataacttaggtaataaaagacttaagttaatcgatgaattacttaaggacagaatagct
atagctctaacaagaattcaaaaattctctgtagatagaatgaatagcttagagtctaag
ctaagctacttctctcttcaagatggagagctagaagactacttctctttgagttctatt
atgaacacaaagcctttccaaatagtaattaaagaattctttaattctcaccaattggtc
caattcttggaccaacaaaatgttctttctgaaattactaataagagaaagatttctgct
atgggtcctggaggtatcaagagagaagaccctaacttaagtattagagacgtacactac
tcttactacggaagagtgtgtcctattgaaactccagaaggtatgaatattggacttatt
atggcacttgcttctctttcaagagtagataagtatggtttcttgaatactccatactac
agagttaagaatggagttattcaaaaagatcaaaaagtttgattgaactctattcaagaa
agaagtttctgtatagcagaagctactacagaaagagatgaaaacggaagacttattggt
cctgtaacagtaagaagagatgaagaagtggaatctgtggatccagaagaagttagttac
atagatgtagactgtacacagattacatctatttctacatctttaattccattcttggaa
catgacgatgcaaacagagctctgatgggagctaacatgcaacgtcaagctgttccactt
attagtcctaagtctccaattgtagctactggagtagaaagtagaatagctagagactca
ggagtagttatccaagcagaagatgatggaatcatcacctacatggatagctctcaaata
agagttaagtatagaggagagctaggtgaaaaaacatatagtcttcaaaaattcataaag
actaaccaaaacacatgtaagaaccaactagtagttcctagaaactctagagaagttaag
aagggagacatactagtagatggacatgctatccaaaatggagagctagctctaggtcaa
aacatacttgtagcctttacctcttggtatggctacaactatgaggatgctatcatccta
tcttctagactagttcaagagaatgtatatacatctcttcacatccaagaatatacagtg
aactgtatgagaaccaagataggtgatgaagaaattacaagattcattcctggatgtact
gcagaagaaaagaaatatctagatgaagatggagttattctagtaggtgctgcagttaaa
gaaggagacatcttagtaggtaagacttctcctaaggcaatgggagaagtaactccagaa
gaaaaattgcttcaagcaattttctctgaaaaagctaagagcgtaaaagattcatctcta
agactaccttcaggttctgaaggtatcgttacaaagatacttcgatactctgcagctaag
ggagacagactaggagatgatgttttggaaactataaagatctttgttacctcaaagaga
aatatccaaattggtgacaagatggtaggtagacacggtaacaaaggtatagtttccaaa
gttgttcctgtagaagatatgccttacctagaggatggtacagctgtagacatcctacta
aaccctctaggtgttccttcaagaatgaacattggtcaaattcttgaaagctatctagca
ttctctgctagaaagctagtattcaagaagattctagaagcattctttgactctagtcta
gaatcttgtgatactctattctctagatctaaggtagaacttgaatcacttggaaaagtg
attaagtcctacctagaaagtaagaatataaagagcagagaagaagctctttctaagtta
actcaactagacttctcaatcatactttcacatgctggtattaagtatgatgaactagaa
attaaagtattaactcctatttttgctggttgcaaaaatagtgacttaataaatatcatg
gctgatgctggagtagacttcaagcatcacaatggtagattcacactgtacgatggtcga
acaggtgaaaaattcaaagatccaatttctgtaggtattatctacatgctgaaattggat
cacatggttgatgacaagatatatgctagatcagttggaccttactccaagattactcaa
caaccattaggtggtaagtgtcaaaatggtggtcaaagatttggggaaatggaagtatga
gcacttgaagcttatggagctgcccacaacttaagagaacttctttctcttaagtcagat
gacatccaagctagaaacttgatctactactcaattattaagggtcaagcacttccaaag
cctacaatttctgagtccttcaagcttcttgttaagaagcttcaagctctagggcttaga
gtaaatataagctttggagctgcaagagaagtattaggatttgatgactatcttgctaga
agaatgaaattgaatgaaaagattcaacttatgagttgaaataaccaatctgtaagagaa
gatcaagagaagtataagttaggagattctaactttgctcaagagagcgaactagaagac
ctaacaattaatggtttccaagtaagtattacttctcctgaataccttctatctctatct
agaggagaagttaagtcagcagaaacaattaactacaaaacattcaaaccagaaaagggt
ggacttttctgtgaagcaatctttggtcctgttaaggactatgaatgtttctgtggaaag
tataagagagttagatataagggtaaatactgtgaaaagtgtggagtatgtatcacagaa
tcaatagttagaagagagtgaatgggacatattgcacttgcatgtccaattgcacacatc
tgaatgatcaaagagctacctttgccatcaaaggtatctctaatgcttggtattaagtac
aagagtgtagaagaagtagtttatttcgttaactacatagttatcgaaataaagaactca
gaaaataagagatattctggtatctttgaaagactagaactagttaatgtttctgatcaa
aatagtcctctgagatctctattcaagattagaaagcttctgcgtctaatctatgaagaa
atagctgaaaaggaaggaacagattctgtttcctatgaacaaggaagagtgtattacaaa
gctctttcttcatctaaccttcctttctcacttcacgatgtatttgaatacatctacaag
tgaagtggtatcaagataggtacaggtgctgaagctatctatgaactacttaagaaagta
gatctagattcacttgaacactctatcctaaaacaacttaaaggtagaaagaaagaagtt
tcttcaagtaatgaacctaagtacaagaaacttctttctagactagaagttgttagatga
ttcaagcaatctggtaatagaccagaatgaatgattctgaagaacattcttgttcttcct
ccaaacttaagacctatagttcaattagatgctggtagatttactaccagcgatctaaat
atcttctacagaagaatcattattagaaatgaaagacttaagaagatcttaagtctaaat
gtaacttcaattattgctaataatgaaaagagaatgctacaggaagctgtagattctcta
attgataattcaagtagaaagaaacctctattagctaaggataagcacccacttaagtcc
ctaactgatcacctaaaaggtaagcaaggtctcttcagacaaaacctacttggtaagaga
gtagactactctggtagatctgttgtagtagtaggacctgaactaaaacttcaccaagta
ggtcttcctatcttgattgtcttgaagttattcaagccattcatcataagagaacttatt
agaagctatatagatgaagaaacaggtgaaagagttcaaattgcacagaacatcaaagta
gctgaaaagatcattgaagatcaagaagatgttctgtgacctgtagttcaaaaggtaatt
aaggaaagacctgttcttctaaacagagctcctactcttcacagcttgggtatccaagct
tttgaacctattattgtggaaggtaaagctatttgtctccaccctctagtaactactgcg
ttcaacgcagactttgacggagaccaaatggcggtacaccttccactatctgaagaagca
gttaaggaagctagagatattcttctagctcctcaccatgtattggcacctaagaatggt
caaccaatcttgatgccatctcaagacatggtattaggtctatactacctaactaataca
agaaaaggagcaaagggagaaggaagactttgctcctcagtagaagaagtaaagtaccta
tacgaaataggagaaatagacttaaatgcattcattcttgtaggtacttctatcttcagc
aataagaagtgaaataagaaaggacttcttattaccactccaggtaaggtaatctttaac
ctagctctaccttctgattacagatatgtaaatgactcttcagaagaaggagtttctgaa
gaagacattgtagagctaggagtagactacactgaagtggttgcaaatattaaggagaaa
gctcctttcagtaagaaagtaatgcaaaccatcatagaagaagtctatgaaggttatcca
ctagaaaaaacatccgagatgttagataatatcaagactctaggattcgagttctctaca
aagtcttgcatcactatctctccatttgatattcctagattcaaagattcctttaaggaa
gatttgatagttgaagctgaaaagaaagtaagagaacaaaaggaattctttgaattagga
atgattactgatgatgagagatatcaaagagtaatcaatctttgaagtgaagttaaggat
aaagtatctgaacaagttaagagctggttcagaggagaagagtacagagataatccaatg
gctatcatggaaaaatctggagctagaggtagcttgtcaaactttgtccaactatcaggt
atgagaggacttatgaatagatcctataactatggacaaagtaatgactccaagataatt
aaggacataatagaagttcctattaagaactcctttatagaaggtcttaatatgattgaa
ttcttcaactcttcctatggatctagaaagagtatggctgacacagcagtgaagactgct
aagtcaggttacatgactagaaaacttgtggatgcttcacaagaagtagtagttagatcc
atagactgtaatcctaagaagggagtcttaataagagctattaaggctgagggaagtgac
agtatggttaagactcttgaagagagacttagatatagatgtgcgtttaaggacattgta
tgtcctcaaacaggagaagtactgtgtgctgaaggagaatacattactcctaagatagct
aagaaaatacaagatcttggattcgaagaagtagaagtgagaggagcatttacttgtgaa
caaaaacgaggtgtttgtcaaaaatgtttcggttacgaccttaagactaagaaaccagtt
aaggtcggaactgctgtcggaataattgcagctcaatcaattggtgaacctgcaacacaa
cttaccatgagaacattccactctggtggtgttgcaggtgaatccaacattactcaaggg
tttgagagactaagacaactatttgatggaattaaacctcactcttgagaacaagcaata
atctcagatattaagggagttgttaagtctattgttcgaagaggaaactctcgaataata
gaaattaagggacctcttggcaagagagtttatgaagttggaatggctattaaggttaga
gtacaagttggagaagaagttaatgttggtactctaataactgaaggtcttctaagtcta
gacgaaattaagagaagtctaggtattgaaaagactagaacttatatggttgaagaagtt
ctgaaagtttactgaatgcatggtctagacttatcagacaagtatgttgaagttatagta
aatcaaatgactaataagtggaaagttctagagtcaacaaacactaaggtcagtgttggt
gaaattctagaaggtgaaaacttcaagaatagaattgataatataattatcgaaaaggaa
gaaatgccagtagctgaaatagaagttctaaacttggaggatgttccaatgagatcagga
tcattcctagcagctgctgcgttccaagacactagaaaggtcttgactgatgcagctgtt
aagggagaacaagacagcatcatgtctctaaaatccaatctaattgttggggaattaata
ggtctgaaatag
DBGET
integrated database retrieval system
