Methanosphaera stadtmanae: Msp_0868
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Entry
Msp_0868 CDS
T00313
Symbol
rpoD
Name
(GenBank) RpoD
KO
K03047
DNA-directed RNA polymerase subunit D [EC:
2.7.7.6
]
Organism
mst
Methanosphaera stadtmanae
Pathway
mst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Msp_0868 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mst03021
]
Msp_0868 (rpoD)
Enzymes [BR:
mst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Msp_0868 (rpoD)
Transcription machinery [BR:
mst03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Msp_0868 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_L_2
DUF5798
SoxA-TsdA_cyt-c
Motif
Other DBs
NCBI-ProteinID:
ABC57257
UniProt:
Q2NFZ6
LinkDB
All DBs
Position
complement(1000104..1000916)
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AA seq
270 aa
AA seq
DB search
MNIEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAH
RLGLIPIVTDLDSYVMPSECDCESGCQHCRVSFLLKEKCEEGNDSKIVYSKDLKSDDPAV
KPVYDTIPIVRLREGEEVELEAIAELGLGSEHAKWQATTTCGYKYYPKIEIDTEKVNDLE
EYVEECPRNVLQIEDDTLVVGNIENCSTCRTCQRLSEKDDNAIVVDFEESKYIFKIETDG
SLKPFDVLTIACDILSEKADNIINFVNEEE
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaattagagaaaaggatgatgaaagagctgtattcgtagttgaaggtgta
gatgatacattcataaacacaattagacgaatatgtcttgtagaaattcctacattggca
attgaagatgtaaacatttataaaaacgatgcaaaaatgtttgatgaagtgttagctcat
agattaggattaattccaatagtaactgatttggattcatatgtaatgccatcagaatgt
gattgtgagtctggttgtcaacattgtagagtttcatttcttttaaaagaaaaatgtgaa
gaaggtaatgattctaaaatagtatattcaaaagatcttaaatcagacgacccagctgta
aaaccagtttatgatacaataccaatagtaagacttcgtgaaggcgaagaagtagaatta
gaagctatagcagaacttggattaggatctgagcatgcaaaatggcaggcaacaacaaca
tgtggatataaatactatccaaaaatagaaattgacactgaaaaagtcaatgacttagaa
gaatatgttgaagaatgtccaagaaatgtattacaaatagaagatgatacattagtagta
gggaatattgaaaattgttctacatgtagaacctgtcaaagattatcagaaaaggatgat
aatgcaatagtagtagattttgaagaatcaaaatacatctttaaaattgaaacagatgga
tcactaaaaccatttgatgttctaacaatagcttgtgatatactatcagaaaaagcagat
aatatcataaattttgtgaatgaggaggaatag
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