Malus sylvestris (European crab apple): 126587143
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Entry
126587143 CDS
T09027
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03020
RNA polymerase
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126587143
09124 Replication and repair
03420 Nucleotide excision repair
126587143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126587143
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126587143
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126587143
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126587143
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126587143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
126587143
NCBI-ProteinID:
XP_050108085
LinkDB
All DBs
Position
2:complement(9121707..9130136)
Genome browser
AA seq
1820 aa
AA seq
DB search
MDIRFPYSPAEVAKVKCVQFGILSPDEIRQMSVVEIEHSETMLGGKPKTAGLSDPRLGTI
DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSVMRCVCFNCSKILVDEDDHK
FKQAMRIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI
EGMKMNAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLSVLKRISDEDSQILGLNPKYAR
PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LQRTSAWHSESESGNITPGDTLVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL
EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLDESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKTEFDRTFTYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ
LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP
GDDQLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
SEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTVIEEDIDFVKAYYEMPDEEV
NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA
EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY
LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSSAYSP
SSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPGSPLTSGVSPDYSPSSPQY
SPSAGYSPSQPGYSPSSTSQ
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggtttccctactcgccagccgaggtggcgaaggtgaaatgcgtgcagttc
ggcatcctcagccccgacgaaatcaggcaaatgtctgtcgtggagattgagcacagtgag
actatgttgggaggcaaaccgaagacggctggtttgagtgatcctcggcttggtacaatt
gatcggaagttgaaatgtgagacgtgtacagccaacatggctgagtgccctggccatttt
gggcaccttgagcttgcaaaaccaatgtttcacatcggtttcatgaagattgtgctgtcc
gtaatgcgatgcgtttgcttcaattgctcgaaaattctagtcgatgaggacgaccacaag
tttaagcaagctatgagaataaagaatccgaaaagcaggctgaaaaaaattttggatgcc
tgcaaaaacaaaaccaaatgtgaaggtggtgatgaaattgatgtccaaggccaagatact
gaagagcctgtaaagaaaagtcggggtggctgtggtgctcagcagcccaagctctctatt
gagggtatgaaaatgaatgcagagtacaaagcccaaaggaagaaaaacgatgacccggaa
cagcttcctgaacccgtggaaaggaaacagacccttactgcagaaagggttcttagtgtt
ttaaagagaataagtgatgaagactcccaaatattgggattaaacccaaagtacgctcgg
ccagattggatgattctacaagttctgcctatacctccacaacctgtgagaccctctgta
atgatggacacctcatccaggagtgaggatgatttgactcatcaattggcgatgataatt
cgtcataatgacaatctcaggcggcaggaacgaaatggttctcctgctcatatcatttca
gagtttgcacaacttctgcaattccacattgccacttattttgacaatgagttgccagga
ctaccaagggctacgcagagatcagggaggcctattaaatcaatttgtagtagactgaag
gcgaaagaagggcgtataagaggcaacttaatggggaaacgtgttgatttttcagctcgg
acagtgattactcccgatccaaacataaacattgatcaattaggagtgccgtggagtatt
gctttgaatctcacataccccgagactgtgactccatataatattgaaaggttgaaggag
cttgttgagtatggcccccatcctccgcccggtaaaactggtgcgaagtatataataaga
gatgatgggcaaaggcttgatcttcgttatttgaagaaaagcagtgatcatcatttggag
cttggatataaggtggaacgtcatttgaatgatggagactttgtcctctttaatcgacaa
cctagtctccataaaatgtctatcatgggccacagaatcaagatcatgccatactcgaca
ttccgattgaatctgtctgtgacctcgccatataatgctgactttgacggggatgaaatg
aacatgcatgtgccccagtcctttgaaaccagggccgaagttttggagctcatgatggtg
ccaaaatgcatcgtctcacctcaggctaatcgacctgtcatgggaattgtgcaggacaca
cttttaggttgtcgtaagatcacgaagagggataccttcatagagaaggatgttttcatg
aatatcttgatgtggtgggaggattttgatggaaaagttcctgctcctgcgattttgaag
ccccggccactttggactggaaaacaggtgtttaatcttataataccaaaacaaataaat
ctccaaagaacttctgcatggcactcagaatcagagagtgggaacataactccaggggat
actcttgttagaatagaaaagggtgaattgctttctggaactctctgcaagaaggccctt
gggacttctacaggaagtcttattcatgttatatgggaagaggttggtccagatgcagcc
cgcaagtttctgggtcatacccaatggcttgtaaattactggctgctgcagaatgctttt
agcattggaattggagatactattgctgatgcagccacaatggagaaaatcaatgaaaca
atttccaaggcgaaaaatgaggtgaaagatcttataagtaaagcccaatccaagcagctg
gaggctgaacctggacgaaccatgatggactcgtttgaaaacaaagtgaaccaggtgttg
aatagggctcgtgatgacgctggaagtagtgctcaaaagagtttagatgagagcaacaat
cttaaggccatggttacagcagggtccaaagggagttttatcaacatatcacagatgact
gcttgtgtgggacagcaaaatgttgagggtaagcgaatcccgtatgggttcatagaccgg
acgttgccccactttactaaagatgattatggaccagaaagtcgtggatttgtagaaaat
tcatacctgcgtggactaactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttatagatactgctgttaagacatctgagactgggtacatccaaaggagactggtg
aaggctatggaggatattatggtgaaatatgatggcacagtacgtaattctttaggcgat
gtcattcagtttctatatggggaagatgggatggatgctgtttggatagaatcgcaaaag
ctggattctttgaaaatgaaaaaaacagaatttgataggacttttacttatgagttggat
gatgaaaattggaatcctgactacatgttgcacgaacatgttgaggatctcaaaacgatt
agagagttccgtaatgtgtttgatgcagaagttcagaaacttgaaacagatagattacaa
ctgggaacagagattgcagtcacaggggataattcttggccactgcctgttaacttgaag
aggcttatttggaatgcacaaaaaacctttaagattgacttccgaaggacttctgatatg
cacccaatggaaattgtggaagctattgataagctccaggagagactgaaagttgttcct
ggtgatgaccagttgagtgttgaagcgcagaagaacgcaacgttgtttttcaacatttta
cttcgcagcactttcgcaagcaaacgggtgttggatgagtacaggcttactcgtgaagca
tttgagtgggttattggggagatagaatcacgcttcctgcaatcacttgtagcaccaggg
gaaatgattggttgcgttgctgcacagtctattggagagcctgccactcagatgacactg
aatactttccactatgctggtgtgagtgcaaagaatgttaccctaggtgtccccaggtta
agggaaattattaatgttgccaagagaatcaaaacgccatccctctctgtctacttaaag
tctgaagctaataaaacgaaggagcgggccaagaatgtgcagtgtgctttggaatacacc
actctgcgaagtgtaactcaagctacagaagtatggtacgatccagaccccacaagcaca
gtaattgaagaggatatagattttgtgaaagcttactatgaaatgccagatgaagaggtt
aatcctgataaaatttcaccttggttgcttcgcattgagttgaatcgcgaaatgatggtg
gataagaagttgagcatggctgacattgctgagaagattaaccttgaatttgacgatgat
ttgacttgtatcttcaatgatgacaatgctgaaaaattgatccttcgtatccgtatcatg
aatgctgaagctccaaaaggggagatggttgatgaatctgctgaagatgatgtttttctg
aagaagattgagagtaacatgctgacagagatggctcttcgtggtattccagatattaac
aaagtgttcattaaacacggtaaagttaacaagttcgatcagaatgaaggatttaaagcg
gagcaagagtggatgctggataccgaaggggttaatctcttagctgttttgtgccacgat
gatgttgatgctaggcgcacaactagtaatcatttgattgaaattctggaaattctcgga
attgaggcagttcgtcggtcattgttggatgagttgagggttgttatatcgtttgatggg
tcctatgttaattatcggcatctcgctatcctttgtgacacgatgacctaccgtgggcac
ttaatggcaataactcgtcatggcattaatagaaatgacactggtcctatgatgaggtgc
tcctttgaagagactgttgatattcttcttgatgctgcagtgttcgcagagacggattat
ttaagaggtgtgacagaaaatataatgttaggacaacttgcaccaattggaacaggagat
tgtgccctgtatctcaatgatgagatgctgaagaatgccattgaactgcagctgcccagt
tacatggatggtcttgattttggtatgacaccgtctcgttctccagtatcaggaacacca
tatcacgagggcatgatgtcccctaattatttgttgagcccaaatcttcggttgtcgcca
atttcagatgctcagttttctccatatgttggaggaatggcattctctcctacttcctct
ccaggctacagcccatcatcccctggatacagcccttcctcgcctggatacagccccact
tctcctgggtacagtcccacctcaccagggtatagccccacttctcctgggtacagtccc
acctctccgacatatagtcctagttctcctggctatagtcccaccagtccagcttactct
cctacgagtccatcatactcaccaacctctcccagctacagccccacctcaccaagctac
agtcccacctcaccaagctacagccccacttcccctgcttacagccccacttcccccgct
tacagccccacttcccctgcatatagccccacttccccatcttacagtcccacgtctcct
tcatacagcccaacttcgccctcctacagcccaacttcaccctcctacagcccaacttct
ccctcctacagccccacatctccatcctacagccctacctcgccagcctacagcccaact
tctcctggttacagcccaacctctcccagttatagtccaacctcgcccagttacagccct
acatctccaagctataatcctcagtctgccaagtacagtccgtcgtcagcttactctcca
agcagtccaagattgtcaccatctagtccatacagtcctacctctccgaactacagccca
acctcaccatcatattcacccacatctccatcgtactctccctcaagccccacatacagt
ccgggcagcccattgacttctggagtgagcccagactatagcccgagttcccctcagtat
agtccaagtgctggatactcacctagtcaaccaggttactcgccatcatctactagccag
tag
DBGET
integrated database retrieval system
