Malus sylvestris (European crab apple): 126602249
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Entry
126602249 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126602249 isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msyl03016
]
126602249
Enzymes [BR:
msyl01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
126602249
Transfer RNA biogenesis [BR:
msyl03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
126602249
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
VESA1_N
TraT
TRAM
DUF6447
Motif
Other DBs
NCBI-GeneID:
126602249
NCBI-ProteinID:
XP_050125035
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Position
15:complement(50151521..50167807)
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AA seq
631 aa
AA seq
DB search
MEDIEDLLIGSGGGAPPGFRLPINTVGMNPKKKPNPNGRNTNKKLSQIQDPLAPLFPKVP
GTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYPLSDNPEEADLWLINTCTVKSPSQSAMDT
LIAKGKGARKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEIVEETLKGHEVRLLSR
KTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVKSVVAD
GVKEIWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDASTMLRIGMTNPPFILEHLKEIA
EVLRHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFKTVVDTLTELVPGMQIATDIICGF
PGETDEDFTQTLSLIKEYKFSQVHISQFYPRPGTPAARMKKVPSTVVKKRSRELTSAFEA
FAPYVGMEGRVERIWITDIATDGIHLVGHTKGYVQVLVAAPESMLGTSAIAKITSVGRWS
VFGEVIETIPHINDKTASTNETRSQEKCFPGANNCETCACSTEPETCACGPESCGGQATS
GECAVMKNVVLLEDRNNRNLLGWLLRKRKNQVEKRVENEIGLGSQKKQEQAQGRLGEWGF
VDRALLGGMLVSFLTIVTLLVHLGFRIPSSN
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaggacattgaggatttgttgattggcagcggaggcggagctcctcccggttttcgt
ctgccaataaacaccgtcggaatgaacccaaagaagaaacccaatcccaatggccgcaat
accaacaagaagctatctcaaatccaagacccactcgctcctctctttcccaaagtccct
ggcactcagactatatatatcaaaacatttggatgctcacacaaccagagtgacagtgaa
tatatggctggtcaactttcagctttcgggtatccgttaagtgacaatcctgaggaggca
gatctgtggctcataaacacatgcactgtcaaatctccaagtcagtctgccatggacact
ctgatagcaaaaggtaaaggtgcaagaaagcccctggtggtggctgggtgtgtgccacaa
ggaagtcgagatctaaaggagctagaaggtgtcagtattgttggagtccagcaaattgac
cgtgtggttgaaattgttgaagagactttgaaaggtcatgaggtgcgccttttgagtcgt
aagacattgcctgcacttgacctccccaaggtgaggaaaaataagttcgttgagattctt
cccattaatgtcggttgtttaggtgcttgcacttactgcaagacgaagcatgctcgtggt
catttaggaagttatactgttgatagccttgtgggacgtgtaaaatctgtggtagctgat
ggagttaaggaaatatggttgagcagtgaagatactggcgcttatggtcgtgacattggg
gtcaatctaccaattttattgaatgcaattgtcgcagaactcccttctgatgcaagcaca
atgttacgaattggaatgacaaatcctccattcattctggaacacttgaaggaaatagca
gaggttttgcgtcatccatgtgtatactcatttctacatgtgccagtccaatctggaagt
gatgccgtcttgaccgcaatgaatcgggaatatactgtaagtgagttcaagacagtggta
gataccctaactgagcttgtgccagggatgcagattgcaactgatataatatgtggattt
cctggtgaaacggatgaagattttactcaaactcttagccttattaaggagtacaagttc
tcccaagttcatatttcacagttttatcctagaccaggaacccctgctgcaaggatgaaa
aaggtccccagtactgtagtgaagaaaaggagccgtgaattgacgtctgcttttgaagct
ttcgcaccatatgttgggatggagggcagggtggaaagaatatggataactgatattgct
actgatggaattcacttggttggccataccaagggatacgtgcaggtgcttgtagccgct
ccagaaagcatgttggggacttcagctatcgcgaagatcacatcggtaggaaggtggtca
gtttttggagaagtgattgagaccatccctcacataaatgataaaacagcttcaacaaac
gaaacgcgtagtcaggaaaaatgttttccaggtgccaacaattgtgagacttgcgcgtgt
tcaacagagccagaaacttgtgcctgtggaccggaaagctgtggaggacaggctacctcg
ggagaatgtgccgtaatgaagaatgtcgttctgttggaagatcggaataacagaaatctg
cttggatggttactgaggaagcgaaagaatcaggttgagaaacgcgtggagaacgaaatc
ggcttgggatcccagaagaagcaagagcaagcccaaggaagattgggtgaatggggtttt
gtcgatagggctcttctgggcgggatgctcgtgagcttcctgacaatcgtaaccctacta
gtacatctcggctttaggattccgtcgtctaattaa
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