Thermothelomyces thermophilus: MYCTH_2294525
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Entry
MYCTH_2294525 CDS
T02231
Name
(RefSeq) hypothetical protein
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mtm
Thermothelomyces thermophilus
Pathway
mtm03020
RNA polymerase
mtm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYCTH_2294525
09124 Replication and repair
03420 Nucleotide excision repair
MYCTH_2294525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtm03021
]
MYCTH_2294525
03400 DNA repair and recombination proteins [BR:
mtm03400
]
MYCTH_2294525
Enzymes [BR:
mtm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYCTH_2294525
Transcription machinery [BR:
mtm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
MYCTH_2294525
DNA repair and recombination proteins [BR:
mtm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
MYCTH_2294525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
zf-C4pol
Motif
Other DBs
NCBI-GeneID:
11508094
NCBI-ProteinID:
XP_003658591
JGI:
2294525
UniProt:
G2Q1R2
LinkDB
All DBs
Position
1:join(1289002..1289358,1289423..1294302,1294374..1294401)
Genome browser
AA seq
1754 aa
AA seq
DB search
MANLIFAHSSAPIREIKEIQFGLLSPEEIKGMSVCHIVYPETMDETRTKPRDGGLNDPLL
GSVDRQFKCKTCTENMTECPGHFGHIELARPVFHPGFIRRTKKLLEMVCHNCSKVLADRS
DPQYAAAMRIRDPKVRFKRVWDICKSKRRCDNDPPKQAEDGEYNLNGTGDRPVEGHGGCG
NIQPVIRQQALTLWGSIETKDEDGVKTKEKKIITPEMALNIFRRMSDEEMIDIGINISQA
RPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIAEGSPQ
HIITDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD
FSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIAKLTKLVQNGPNEHPGARFVV
RSDGTRLDLRHHRRATGIQLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRVMPYS
TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQD
TLAGVYKLCRRDVFLTKEEVMNIMLWVPDWDGIIPLPAIHKPRPRWTGKQIISLIIPSII
NIHMPSEQQDKDHPFEDDGLLIQQGELMFGLLSKKSVGASGGGIVHLCYNELGPQGAMDF
LNGCQRVVNYWLLHNGFSIGIGDTIPDEVTIGLIQKHINDEKAEVARLTQQATNNELEPL
PGMNIRETFENKVSTALNKARDKAGTSTQKSLKDLNNAVIMARSGSKGSSINISQMTALV
GQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLI
DTAVKTAETGYIQRRLVKALEDAEARYDGTVRNSLGDIIQFVYGEDGLDGLAIERQRVDH
MNLSNKNFEKRFRLDVMDEAASSSILDSLEYGREMASDPAVQELLDQEYEQLLADRELVR
QINRRKMADDYMQLPLNVARIIETAKKLFKVDDSQRSDLTPNDVIPAVRALLDRMVVVRG
DDIISKEADYNSTLLFKIQLRSRLAYKRLAVEQRINKLAFEHILGELENRWARSMVAPGE
MVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYLDY
ANATQEDAKRMRSAVEHTSLRSVTAVTEIYYDPDITSTVIPEDYDMVESYFLIPDSSDQD
SIENQSRWLLRLTLDRQKMLDKGLRVEDVAARIKEEYKKDVAVIFSDNNAEEMVIRIRVI
RQDDDKDEDGNKIIEDDVMLKRLEKHLLDNCTLRGVPGIERAFLNKGVKLAVLPDGSQVA
NKETPECMEWYLDTQGTSLREVLTIEGVDTRRTYTNDLYQIVDVFGIEAARAALMQELTQ
VLAFGGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAAA
VGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVISDNSRMGLMPGMTIKGGQLE
GAATPYDTGSPMADNGYLGSFSPTMGNFSPIQGAGSDSPSGFGTEYGGGFGGSSSANPYA
TSPRATSPFSTSPTSPFSYSPSSPLGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPML
RPGSPTSPNYSPTSPSYSPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHS
TSPSYSPASPTWSPTSPDAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSG
GSGDQYSPTSPTND
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccttatctttgcgcactcgagtgcgccgatccgcgagatcaaggagatccag
ttcggactcctgtcccctgaagaaatcaagggaatgagcgtctgccatatcgtctatccc
gagaccatggacgagacccggacgaagcctcgcgatggtggcctcaacgatcccctcctc
ggctccgttgaccgacagttcaaatgcaagacgtgcaccgagaacatgacggagtgcccc
ggccatttcggccacatcgagcttgcccggcccgtcttccaccccggtttcatcaggcgc
acaaagaagttgctcgagatggtctgccacaactgtagcaaggtgttggctgatcgatcc
gaccctcagtatgccgccgcgatgcggatccgggatcccaaggttcggttcaagcgggtc
tgggatatttgcaagagcaagaggcgttgcgacaacgatccgcccaagcaggccgaggat
ggtgaatacaacctgaacggcaccggagaccgacccgtcgaaggtcacggaggatgcggc
aacatacagcccgtcattcgccagcaggctctcactctctggggcagtatcgagaccaag
gatgaagacggagtgaagaccaaggagaagaagatcatcactccggaaatggctctcaat
atcttccgccgcatgtcggacgaggagatgatcgacatcggcatcaacatctctcaagcc
cggcccgaatggatgattattactgtccttcccgtccctccccctccagtccgtcctagc
atttccatggacggaactggaacaggcttgcggaacgaggatgacttgacctacaagctc
ggcgatatcattcgcgccaacggcaatgtcaggcaggctattgcggagggctcgccccag
cacatcatcacggactttgagaatctgctccagtaccacgtcgctacctacatggacaac
gacatcgccggccagccacaagcgctgcaaaagagtggtcgtcccgttaaggctattcgc
gcccgcctaaagggaaaggaggggcgccttcggggcaacttgatggggaagcgtgtcgac
ttttcggctcgtaccgtcatcactggcgatgccaacatctcgttggacgaggtcggcgtg
ccgcgcagcattgctcgtaccttgacctaccccgaaacggtcacgccttacaacattgcc
aaactcacaaagctggtccagaacgggccgaatgagcaccctggagccaggttcgtcgtc
cggtcggacggcactcgtctcgatctccgccaccaccggcgggcgactggcatccagctc
gagtacggctggaaggtggagcgccacctgatggatggtgactacatcatcttcaaccgc
cagccctctcttcacaaggagtcaatgatgggccacagggtacgggtcatgccctattcc
actttccggctcaacttgtcagttacttctccctacaacgccgatttcgacggtgacgag
atgaatttgcacgttccccagacggaggagacgcgtgccgaggtcaaggagctatgcatg
gttcccttgaacatcgtctcgccccagagaaacggccccctcatgggtattgttcaggac
acactggctggcgtctataagctctgtcggcgagacgttttcctcaccaaggaggaggtg
atgaacatcatgctctgggttccggactgggatggcatcattcctctgcccgcaatccac
aagccccgcccccggtggaccggcaagcagatcatcagcttgatcatccccagcatcatc
aacattcatatgccctcggaacagcaggacaaggaccatccttttgaggacgacggcctc
ctcattcagcaaggcgaattgatgttcggcctgctgtcgaagaagagcgtcggcgcctct
ggtggcggcattgtccacctgtgctacaacgagctcggcccgcaaggtgccatggatttc
ctcaacggttgccagcgggtagtcaactactggctgttgcataacggcttcagtatcggt
atcggcgacacgatccccgacgaggtgaccatcggcctgatccagaagcacatcaacgac
gagaaggccgaggttgcccggttgacgcagcaggccaccaacaacgagcttgagccgctt
cccggcatgaacattcgcgagaccttcgagaacaaggtctcgacggctcttaacaaggcc
cgcgacaaggccggcacaagcacccaaaagagcttgaaggatctgaacaacgcagtcatc
atggcacgctccggttccaagggctcgtcgatcaacatctcgcagatgaccgccttggtg
gggcaacagatcgttgaaggaaagcggatcccattcggcttcaagtaccgcacccttccg
catttcaccaaggacgactactcccccgaggccaggggtttcgttgagaactcctacctc
cgcggccttacgccctcggagttcttcttccacgccatggctggtagagagggtctgatt
gataccgctgtcaagacagccgaaacgggctacatccaacgccgccttgtcaaggcgctg
gaggatgcggaagctcgctacgacggaaccgtgcgcaactcactgggcgacatcattcag
ttcgtctacggcgaggacggcctggacggtctcgccatcgagaggcagcgtgtggaccac
atgaacttgtcgaacaagaacttcgaaaaacggttccgtctagacgtcatggacgaagcc
gcctcgtcctcgatcctcgattccctcgagtacggcagggaaatggctagtgatccggcc
gtgcaggagctcttggaccaggagtacgagcagttgctcgccgatcgtgagctcgtgcga
cagatcaaccgtcgcaagatggccgatgattacatgcagcttcctctcaatgtcgctcgc
atcattgagacggccaagaagctcttcaaggttgacgattctcagcgcagcgacctcacg
cccaacgacgtgattcccgccgtccgggccttgctcgacaggatggtggtagtccgcggg
gatgatataatctcgaaggaggccgattacaactcgaccctcttgttcaagatccagttg
cgctctcgcctggcgtacaagcgcctcgctgtcgagcaaaggataaacaagctagccttt
gagcacatcttgggcgagctcgagaaccgttgggcccgctcgatggtcgcgcccggtgag
atggttggcgtgctggctgcgcagtccatcggagagccggcaacgcagatgactctgaat
actttccacttcgctggtgtgtcgtctaagaacgtcacgctgggtgtgcctcgcctcaag
gaaatcctcaacgtcgccaaggacatcaagacgccgtccatggttgtctacctggattac
gcaaatgcgactcaggaggatgcgaagaggatgcgcagtgcggtcgagcataccagcctc
cgttctgtcacggccgtgacggagatctactacgatccggatatcacctccaccgtcatc
ccagaggactacgacatggtcgagtcctacttcctgattcctgattcctctgaccaggat
tccatcgaaaaccaatcccgctggctgctcaggctgaccctcgatcggcaaaagatgctt
gacaagggcctgcgcgtagaggatgttgcagcacggatcaaggaagaatataagaaggac
gttgctgtcattttcagcgacaacaacgccgaggagatggtcatccgcatccgtgtcatt
cgccaggatgacgacaaggatgaagacggcaacaagatcattgaggatgacgtgatgctg
aagcgtctcgagaagcatctccttgacaattgcaccctacgcggcgttcctggcatcgag
agagccttcttgaacaagggtgtcaagctggcggtgctaccggacggctctcaggtggcc
aataaggaaacaccagagtgcatggagtggtatctcgacacgcagggcacatccctgagg
gaggtcctcacgattgaaggcgttgacaccaggcgcacctatacgaacgacctgtaccag
atcgtggatgtgttcggcatcgaagcagcgcgggcggcccttatgcaggagctgacccag
gtgctcgcgttcggtggttcttacgtgaaccaccggcatctcgcacttcttgtcgatgtc
atgacataccgtggcagcatcgccgcggtgacacgccacggtatcaaccgcgccgacacg
ggtgctctgatgcgctgctctttcgaggagacagttgagattctgctcgaggctgccgcc
gtcggtgaactcgacgactgccgtggtatctcggagaacgtcatgttgggccagatggca
cctatgggcaccggccactttgatgtacttctcgaccctaagatgctcgagacggtcatc
tcggacaactctcgcatgggcctgatgcccggcatgactatcaagggaggccagctcgag
ggtgccgcaacgccctacgacacgggttcgccgatggcagacaacgggtatctaggcagc
ttctccccgactatgggtaacttctcgcccatccagggtgcaggctccgacagccccagc
gggtttgggaccgagtacggcggcggttttggtggttcgagcagcgccaacccatacgcg
acgagccctcgcgctaccagccccttctctacatcgcccacttctccattcagctactcg
ccgtcgtcacctctggggtactcgcccacttcccctctcctcgatgccggtggtcggtat
gcttcgagcccgcagttcagtccgtcgtccccgtcattctcgccgacgtcgccaatgctg
cggcctggaagcccgaccagcccgaactacagcccaacatcgccgagctattccccggcg
tcgcccgcagcaacccgtcattactcccccacgtcgccagcgcagttcaactcgccgacg
tccccatcgtactcgccgacgagccccagctacagccctgcttcgccgaatctgcattca
acctcgccgtcgtactcgccggcatcacctacctggtcgcctacgtcgccggatgcctac
tcaccaacaagcccgtcgttccatcggtcgcctgggcagcagatgtcgccgaccagccct
ggctactcgccgacatcaccttccttctcacctaggactccgggccgcggcccgtctggg
ggcagtggtgatcagtactcacctacttctccgacaaatgattaa
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integrated database retrieval system
