Medicago truncatula (barrel medic): 11409951
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Entry
11409951 CDS
T01716
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X2
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
11409951
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
mtr01001
]
11409951
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtr03021
]
11409951
03036 Chromosome and associated proteins [BR:
mtr03036
]
11409951
Enzymes [BR:
mtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
11409951
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
11409951
Protein kinases [BR:
mtr01001
]
Serine/threonine kinases: Other
TAF1 family
11409951
Transcription machinery [BR:
mtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
11409951
Chromosome and associated proteins [BR:
mtr03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
11409951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
ubiquitin
zf-CCHC_6
Rad60-SLD
Motif
Other DBs
NCBI-GeneID:
11409951
NCBI-ProteinID:
XP_003612586
UniProt:
G7K6S4
LinkDB
All DBs
Position
5:complement(11028261..11048831)
Genome browser
AA seq
1902 aa
AA seq
DB search
MGYDSDNSQDGRNEDDEEEYEESGKGNHFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALA
DKLGPSLTDIDLSGKSPRTPPGIVEQDCGEKAEDAVDYEDIDEEYDGPETETANEEDYLL
PKKDFFAAEASLEALERKTSVFDDENYDEESDKEQDFVNNEAKVDNISLSVEQEESFVDA
SKEGSALEHDLQVSLQTEELDADVQTPEEVPEFLKRSMATPLPVLYVDDGKAVLRFSEIF
GIQEPPRKGEKKERRHSTPRDRYKSFDLSDDIVEEDEEEFLKGFSESLTLNKQVCVVRTD
VSENNVDLEFPKFGFLHGDASLTVKDDRQPKDSCLSGEPMKGDFADDLAWKDHTLMLANF
YPLDQRDWEDEILWGNSPAASDNDNNVESCEISGSELRTSDGGEIEIETRNNLQSVPLKI
LEEKDHNVFTCCSPVSLDPLDSRDSNGVKTNSISESLFHPQLLRLEVDSSHIEDGRGVDV
SEKHNQIGQAKRLTKVMSQNRDLMDDSWVDKIMWEELDRPKMKPKLIFDLQDNQMHFEVL
DSNDGTHLHLHAGAMILTRSLKSISVESSELPGHGGQYGWRYVANDKHYSNRKTSQQLKS
NSKKRSAHGVKIFHSQSALKLQTMKLKLSNKDIANFHRPRALWYPHDNEVAVKEQGKLPT
HGPMKIIMKSLGGKGCKLHVGAEETLSSVKAKASKKLDFKATETVKIFYLGRELDDQISL
IAQNVQPNSLLHLVRTKIHLWPRAQKVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCE
ERPLLLSNVGMGARLCTYYQKSSPDDHSGAALLRNTDSSLGHIISLDPADKSPFLGDLKP
GSSQSSLETNMYRAPVFAHKVPPTDYLLVRSPKGKLSLRRIDKVNVVGQQEPLMEVFSPG
SKNLQTFMMNRLLVHMCREFQAAEKQHLSPYIRIDDFLSQFPFLSEASFRKRIKEYANLQ
RGANGQSIFVKKRNFRMWSEDELRKMVTPELVCAFESMQAGLYRLKHLGITETHPNNISS
AMSRLPDEAIALAAASHMERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGL
GFSYARAPPKAPVSNAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEDI
ANQTRWHRIATIRKLSSEQAASGVKVDPTTIGKYARGGQRMSFLQLQQQTREKCQEIWDR
QVQSLSTLNGDDNESDSEGNSDLDSFAGDLENLLDAEEFEDGEEATNDLKRDKGDGVKAL
KMRRRTTLAQTEEEIQDEAAEAAELCRLLMDDDEAYRKKKKKGKVMVNPRRLVPKLQPKF
VFDNTEQVKQITNTLQLNGSNHFKEDALTDHREEENLSAKKSKSVKVNKVKKNDISPISV
PNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDPEAQLESTD
MEKPTGKSSFGDPSSQSQHQLPSKKSISKIVTKLAPVENSTKIPLKFKCSSTEKSSDRPA
VETLQSSDKPVTSDKPVISDSETAKSAKISKIIIPNKVKSDDTQAESLKHAIVIRPPTDP
GRGQVDSHKFPIKIRPPAEIDRERSHKKIVIKRTKDVVDLELDSPGGNTGFEHRKTKRIV
ELANFEKHRKQETMYSTESLVKRNSKEDRRWWEEQEKRRNEARLREDKARRYRKEEMRMQ
EQERLNDLKMQEQERLDDLRRYEEDIRKEREEEERQKAKKKKKKRKPELRDEYLDDSRER
RHGKRMLERERSGKRRSVVELGKFGEDFMPPTKRRRGGGGEVGLANILESIVDAIVKDRY
DLSNLFLKPVPKKLAPDYLDIIERPMDLSKIRERVRNMEYKSREDFRHDVWQITFNAHKY
NDGRNPGIPPVADMLLEYCDYLLNENDDSLTAAEAGIETKDF
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggggtatgattcggataattcacaagatgggagaaacgaagatgatgaagaagaatat
gaggagtctggcaagggtaatcattttctcgggttcatgtttggaaatgttgataattct
ggtgatctcgatgttgattatcttgatgaggatgcaaaggagcatctatctgcattggct
gacaagctgggtccatcattgacagatatagatttgtcaggaaagtcaccacgaacaccg
cctggcattgttgaacaagattgtggggaaaaggctgaagatgctgtcgattacgaagat
attgacgaagagtatgatggtccggagacggaaactgcgaacgaagaggactatttattg
ccaaaaaaggatttttttgctgccgaagcctctcttgaagctttggagcgcaaaacttct
gtcttcgatgatgaaaattatgatgaagaatctgataaggaacaagactttgtgaacaat
gaagctaaagtcgataacatctctctatctgtggagcaggaggagagctttgtagacgca
tctaaagaagggagtgctcttgagcatgatttacaagtgtctctgcagactgaagaattg
gacgctgatgtacaaacacctgaggaagtacctgaatttttgaagaggtctatggctaca
ccattgcctgtattgtacgtggacgatggaaaggcagttttacgcttttctgaaatcttt
ggtattcaggaacctcctcgaaagggagaaaagaaagagcgtcggcattccactcctaga
gatagatacaagtctttcgatttatctgatgatattgtagaagaagatgaagaggagttc
cttaaaggcttctctgagagtctaacacttaacaaacaggtttgtgtagtccgtactgat
gtatcagaaaacaatgttgacttggaatttccgaaatttggatttcttcatggagatgcc
tcacttactgtgaaagatgatcggcaaccaaaggactcttgtcttagtggtgaaccaatg
aaaggggattttgcagacgatcttgcctggaaagatcataccctcatgttagccaacttt
tatcctcttgatcagcgagactgggaagatgaaatcctttggggcaactctcctgctgca
agtgataatgataataatgttgagagctgtgaaatttctggatctgaattgagaacttct
gatggtggtgaaatagaaattgaaaccaggaataatcttcagtcagtgccccttaagata
ctggaggagaaagatcataatgtattcacgtgctgctctcctgtttcattggatccctta
gactcaagggattctaacggggtcaaaaccaattcaatatccgaaagtctttttcatccc
cagcttttgaggctagaagtggacagttctcatattgaagacggaagaggggtggatgta
tccgagaagcataatcaaattggtcaagcaaaacgtttgaccaaggttatgtcacaaaac
agagacctcatggatgattcatgggtagacaaaataatgtgggaggagcttgacaggcct
aagatgaagccaaagcttatatttgatcttcaggataatcaaatgcactttgaagttttg
gatagcaatgacggtacccatcttcaccttcatgccggggctatgattttaactcgctct
ttgaaatcaatcagcgtggagtcttctgagctaccgggacatggaggtcaatatggttgg
agatatgttgctaatgacaaacactattcaaatcggaaaacttctcagcaattgaaatca
aactcaaagaaacgctcagctcatggtgtcaaaattttccactcgcaatccgcactgaaa
ctgcagaccatgaaattgaagttgagcaataaagatattgcgaattttcaccggcctaga
gcactatggtatccccatgacaatgaggtggctgttaaagaacaagggaaattacctact
catggacccatgaaaattattatgaaaagcttgggtggcaaagggtgtaagctgcatgtt
ggtgctgaagaaactctctcttctgttaaagcaaaagcttccaaaaaactagatttcaag
gcaacagaaacagtgaaaatattttatttgggtagggagcttgatgatcaaatatcactc
attgcacaaaatgttcagccaaactccttgttacatcttgtccgtacaaaaatacattta
tggcctagggcacaaaaggttcctggtgagaacaagtctctgcgtcctcccggagcattc
aagaaaaaatctgatctttctgtaaaagacggacatgtttttcttatggagtattgtgaa
gaaaggcctttacttctcagcaatgttggaatgggtgcaagactttgtacatactatcag
aaaagttctccggatgaccactctggcgccgccttattacgcaatacagatagtagcttg
gggcatattatttctctggaccctgccgataaatctccctttcttggtgatttaaaacct
ggtagcagtcagtcatcgcttgagaccaatatgtatagagcacccgtatttgctcataaa
gttccaccaactgactatctgttggttcgttctccaaagggaaagctatcgttaaggcgc
attgataaagttaatgttgttggacagcaggaacctcttatggaggtgttctcgcctgga
agtaagaatcttcagactttcatgatgaacaggttattggtacacatgtgccgtgaattc
caagcagcagagaagcagcacttgtctccatacattcgcattgatgactttctttcgcag
tttccttttctttcagaagcctcatttcgtaagaggatcaaggaatatgctaatttacag
aggggcgcaaatggacagtcaatttttgttaaaaagagaaatttccgcatgtggtctgaa
gatgaattgagaaaaatggtgacaccagagcttgtttgtgcctttgaaagcatgcaagct
ggcctctaccgtttaaaacatttaggaattactgaaacacatcctaataatatttcatct
gcaatgagccggcttcctgatgaagcaatagcactggctgctgcatcacacatggagagg
gaactgcaaattactccatggaacttgagtagcaattttgttgcctgtacaagccagggt
aaggaaaatattgaacggatggaaatcacaggtgttggtgatccatcaggtcgtggcttg
ggatttagctatgctcgggcacctccaaaggcaccggtgtctaatgcaatggtgaagaag
aaagcagctgctaaccgaggaggttccactgttactggtacagacgctgatctacgtaga
ttaagcatggaggctgcacgagaggtacttcttaagttcaatgttcctgaggaagacatt
gcaaaccaaaccagatggcatcgcattgctacgatacgcaaactttcaagtgagcaagct
gcatctggggttaaggttgatccaacaactataggaaaatatgctcgtggtggtcagcgg
atgtcctttcttcagttacagcagcagaccagagaaaagtgccaggagatttgggataga
caagttcagagtttgtcaactttaaatggtgatgataatgagagtgattcagaagggaat
agtgatctagattcttttgctggagatctggaaaatttgcttgatgctgaggaatttgaa
gatggtgaagaagccactaatgacttaaaacgtgataagggagatggtgttaaggctctc
aaaatgagaagacgaacaacattggcccagacagaggaggaaatacaagatgaagcagct
gaggccgctgaattatgcaggttgcttatggatgatgatgaagcttaccggaagaaaaag
aagaaaggcaaggttatggtgaatccaagaagattggtaccaaaactacaaccaaaattt
gtctttgacaacactgaacaagtaaagcaaataacaaatacattgcaactcaatggatct
aatcattttaaagaggatgcacttacagatcatagggaggaagaaaatttatctgctaaa
aaaagcaaatcagtgaaggtcaataaagtaaagaagaatgacatttcacccattagtgta
ccaaacaaaaaaatcaaattaaatatgggagaaggaattaagaaccaggtatttaaggag
aaaaaaccatcaagggaaactttcgtttgtggagcatgtggtcagcttgggcacatgcga
acgaacaagaactgtccgaaatatggtgaagatccagaagcacaacttgaatctacagac
atggaaaaaccaactggaaaatccagctttggtgatccctctagccagtcccagcatcaa
ctcccctccaaaaagtcaatatcaaaaattgtaacaaaacttgctccagttgagaattca
acaaaaattccattgaagttcaaatgcagttcgacagagaaatcttctgatagacctgca
gtagaaactctgcagagttctgacaagccagtcacttctgacaagcctgtcatttctgac
tcagaaactgctaagtctgctaaaattagtaagataattattccaaacaaagtgaaatca
gatgacacacaggctgaatctcttaagcatgctattgttatacgtcctcctactgatcca
ggtagaggtcaggttgattctcataagttcccaattaaaatccgcccgcctgcagaaata
gatagggagagaagtcacaaaaagattgttataaaacgtacaaaggatgttgttgatctg
gaacttgacagtcctggtggaaatacaggatttgaacacagaaaaactaaaagaattgtg
gaattggcaaattttgagaagcacagaaagcaggagaccatgtattcaactgaaagtttg
gtaaaacggaattctaaagaggatagaagatggtgggaagagcaagagaaacgaagaaat
gaagcgagactcagagaagacaaagcaaggaggtaccgcaaagaagaaatgagaatgcag
gaacaagaaagattaaatgatttaaaaatgcaggaacaagaaagattagatgatttaaga
agatatgaagaagatattagaaaggagagggaagaggaagaacggcaaaaagctaagaag
aaaaagaaaaagagaaagcccgagttaagagatgagtatttagacgattctcgggaaaga
agacacggtaagaggatgcttgaaagagaacggagtggcaaaagaagatccgttgttgag
ttaggaaagtttggtgaagattttatgccgccaacaaaacgccgaagagggggaggagga
gaggttggtttggcaaatatcttggagagtattgtggatgccattgtgaaagataggtat
gacctgtctaatctttttttgaaaccagtgcccaagaagcttgcccctgactacctggat
atcatagagaggccaatggatctttccaaaatcagggagagggtgcggaacatggagtac
aaaagtcgtgaagacttcagacatgatgtatggcaaattacttttaatgcccataaatat
aatgatgggcgaaatcctggaattcctccggttgcggatatgcttttggaatattgtgat
tatttgttgaatgagaatgatgatagtctcactgctgctgaagccggtattgaaactaaa
gatttctaa
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