Medicago truncatula (barrel medic): 11428339
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Entry
11428339 CDS
T01716
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
11428339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtr03019
]
11428339
Enzymes [BR:
mtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
11428339
Messenger RNA biogenesis [BR:
mtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
11428339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
SRPRB
AAA_22
AAA_24
ABC_tran
TrkA_C
MobB
ATP_bind_1
Motif
Other DBs
NCBI-GeneID:
11428339
NCBI-ProteinID:
XP_003592786
UniProt:
G7IF21
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All DBs
Position
1:complement(56155426..56159361)
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AA seq
438 aa
AA seq
DB search
MAYGGAGPAVTSSNSTPTIKQVKLEKECELRIEVSDSPLRLRLLNGNAEIFGTELPPEIW
LNFPPRLKFAVFTWYGATIEMDGTPETGYTADETPMVSYVNVHAILEGRRDRAKKSPSDD
SVLSQGPRVIVVGPSDSGKTTLSRMLLSWAAKQGWKPTFVDLDIGQGSITVPGCIAATPI
EMPIDPVEGIPLEMPLVYFYGHTSPSNNVELYKVLVKELAGILERQFAGNAESRAAGMVL
NTMGWIEGLGYDMLLHAIRTFKANVVLVLGQEKLCSLLRDVLKGEPKVDVVKLQRSGGVV
SRPVKFRQRSRSNRIREYFYGLTNDLSPHSNISNFGDLFVYRVGGGPQAPRSALPIGAEP
AADPTRVVAVNINRDLLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLTPSA
GELPSKYLILGTLTWLET
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatggcggtgcaggtcccgctgttactagttcaaattcgacaccgacaattaag
caagtgaaattggaaaaagaatgcgaattgagaattgaagtctccgactcacctcttcgt
cttcgactccttaatggaaacgctgagatttttggtaccgagcttccacctgaaatctgg
ctcaattttcctcctagactcaagttcgccgtttttacttggtatggtgctaccattgaa
atggatggtactcctgaaactggttatactgcggatgagacaccaatggttagttatgta
aatgtgcatgctattttagaaggaagaagagatcgcgctaagaaatcaccttcagacgac
tctgtattatctcagggtcctagggtgattgttgttggaccttcagattctggaaagact
accttgtcaaggatgcttcttagttgggcagctaaacaaggttggaagcccacctttgtt
gacttggatattggccaagggtctataacagttcctggatgcattgctgccactccaatt
gaaatgcccatcgatccggtggagggaattcctcttgaaatgcctcttgtttacttttat
ggacacacatctccaagtaataatgtagaattgtataaagtgcttgtcaaggagctcgcg
gggatactggagagacaatttgctggcaatgctgagtccagagctgctggaatggtgtta
aataccatgggatggatagaaggactgggctatgatatgctattgcatgcaatccgtaca
ttcaaggccaatgttgttttggttttgggccaggaaaaactgtgcagtttgctcagagac
gtgcttaagggtgagcctaaagtagatgttgtgaaacttcagaggtcgggtggagttgta
tctaggcctgtgaagttccgtcagaggtccagaagtaataggataagggaatacttttat
ggtcttacaaatgatctttctcctcattcgaatatttcaaattttggtgacttgtttgtt
tatcgagttggtggtgggccacaagctccacgctcagcgttgccaattggagcagaacct
gctgcagatccaacgagagttgtagctgtgaatataaatcgagatttgctccatgcagtc
cttgctgtctcatttgccaaggaacctgatgagatcatttcaagcaatgttgctggcttt
atctatgtaacagacattgacattcagagaaagaagataacataccttacaccatctgct
ggagaacttccaagcaagtatttaattttgggaaccttaacatggcttgaaacttga
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