Medicago truncatula (barrel medic): 25482228
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Entry
25482228 CDS
T01716
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
mtr
Medicago truncatula (barrel medic)
Pathway
mtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
25482228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtr03400
]
25482228
Enzymes [BR:
mtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
25482228
DNA repair and recombination proteins [BR:
mtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
25482228
FA (Fanconi anemia) pathway
Downstream FA components
25482228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
Yippee-Mis18
Pex19
Motif
Other DBs
NCBI-GeneID:
25482228
NCBI-ProteinID:
XP_013466223
UniProt:
A0A072VE13
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All DBs
Position
1:complement(8633454..8647929)
Genome browser
AA seq
1224 aa
AA seq
DB search
MYSSSSAEKKPNPKNVYHIGGLPVEFPYQPYGSQFAFMGRVISTLNRAQNEGHSHALLES
PTGSGKSLSLLCSSLAWQQHYKPTPPQTAADPLANGGGFLLDEVLLPLEPTNKKLKKKTV
PTIYYASRTHSQITQLVRELRKTSYRVPMALLASRKHYCTNKNIRGRENIDEECKQLLKD
KVIGCPEFKSVQKVKAHPSLQKGGCNEVHDIEDLVKVGQSVKGCSYYAARSMSNDAQLVF
CPYNYIINPVIRGAMEVDIQGAIVIFDEAHNIEDISRDAGSVDIEEDTLDKLQMELEQLC
HSDIAIYLPLYEMTQGLTSWMEHKKTTLEKRDFQHYVSCWTGDKALQELEEANISKQCFP
ILLECATKAIKVYTDLEEDEPHLSGMSVITLEGLFSSLSYFFSKNGSHMLDYQLALQRTV
RKHDRRASGNWTHTLSLWCLNPAAVFREVADLSLSVILTSGTLSPMMSFSSELGVKFETN
LEAPHVIDTDSQVWPAIISTGPGNYPLNASYKTADVYAFQDAVGRSLEEIFKIVSGGCLV
FFPSYKLMEKLCTRWSETGQWSRLKAEKPLFVESKGGSQDDFELTLKGYYDSIHHDKKPA
SGRKRRIKKTDLNHFHAVDSIQDTKKGGAALLGVCRGKVSEGIDFSDDNARAVIIVGIPF
PNMYDIQVALKKKYNDTFKSSKQLLGGNEWYCHQAFRALNQAAGRCIRHRLDYGAIILLD
ERFREERNKAFISKWLRKPLRVYDSFELSLEKLKSFFENAKERYGLDTVHATTNLNLNDD
DGVQNKDGNMWFPKKKNQKLNKSRNGAEKETSVIEDKISIPTPSLSSHNLGESQPSAPRN
SNTYSFKDHINLQCCNLTERFTEASSVTFTHDETPTVKESPSSHIASGAGSAYYSKDDNS
DCTIIEDHSSSFPVSSTTGSKISNTVTPEKSVTANNIPESSLNSSVNSHNQKRRKPTVVP
YIDLIEEENHEASSVSTPKWYTKSSVEVREATHETECSLGRISNLQSPQLPTSNLPGSCS
LTIPLLDKRLLLFCSLCKNPLGRHENHLSLTCSLISSSIVHLRFLLKKRLATYTADAEKS
VPVIVTDSSFVDQRVCNRVPKSTQEEGIWCPEDGCVFSTIFCPFCSNTNNLLGVQIMATN
SSNAKLLDKILFFFDSLEVKYQEEAGKSASEEVDFSPITDSGMDGVAALNSFEKYSYVPQ
PGKSEVWKSRKSKPKLRGSPYAEC
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgtattcctcttcctccgccgagaaaaaacctaaccctaaaaatgtataccacatcgga
ggtcttcccgtcgaatttccataccaaccctacggttctcaattcgcgtttatgggtcga
gttatctcaacccttaatcgagctcagaatgaaggtcactctcacgcgttactggagtcc
cccaccggttccggtaaatccctttctcttctctgctcctctctcgcttggcagcaacac
tataaacccacccctccgcaaaccgccgccgatcctctcgctaacggtggtggatttctt
ctcgacgaggttctacttcctttagaacctaccaataagaagctcaagaaaaagacagtt
ccaactatttattatgcctcgagaacacactcacaaattactcaattggttcgtgaattg
cgcaaaacttcatacagggtgcccatggctttactggcatcacggaagcattactgcacc
aataaaaatatacgtggcagagagaacatagacgaagaatgcaaacaacttttgaaagat
aaagtaataggatgtccagagttcaaaagtgtacagaaagtcaaagctcacccttccctt
cagaaaggaggatgcaatgaggtgcatgacatagaagatctcgttaaagttggacaatcg
gtgaaaggttgctcttattatgctgcccgttctatgtcaaatgatgcacaattagtattt
tgtccatataactacatcattaatccagtcattcggggagcaatggaggtggatattcaa
ggagccatcgtgatattcgatgaagctcacaatatagaggacattagtcgtgatgctggt
agtgtggatattgaagaggatacattggacaaactacaaatggagctcgagcaactctgt
cattcagatattgcaatttacctacccctgtatgaaatgacacagggccttactagctgg
atggaacacaagaaaactactctggaaaaacgtgactttcagcactatgtgtcatgttgg
actggtgataaagctttacaagagcttgaagaagcaaatatttcaaagcagtgcttccct
atcttgctagaatgtgctactaaggcaatcaaagtttatactgacttggaagaagatgaa
ccacatttaagtggcatgtcagtgataacattggaaggcttattctcatcactatcttat
ttcttctcaaaaaatggatctcatatgttggattaccagcttgctcttcagcgaactgtt
agaaaacatgatagaagagcttctgggaactggacacacactttaagtctgtggtgcttg
aatccagctgctgtatttagagaggttgccgatctttcgttatcagtcatattgacttct
gggacactgtcaccaatgatgtcgttttcttctgaacttggagttaagtttgaaactaat
cttgaagctccacatgtgattgatactgattcacaggtgtggcctgctataatctccact
ggtcctggtaattatcctttgaatgcaagttacaaaactgctgatgtatatgcattccag
gatgcagttggaagatctttagaggaaatcttcaagattgtttcaggtggttgtcttgtg
ttctttccaagttataaattgatggaaaaattatgcacccgatggtctgaaacaggtcaa
tggtctcgactcaaggcagaaaagcccctttttgttgaatcaaaggggggaagccaagat
gattttgaacttacattgaagggttattatgactcaattcatcatgacaaaaaacctgct
tctggaaggaaaagaaggattaagaaaactgatctaaatcacttccatgcagttgattcc
atacaggatactaagaaaggaggagcagctttacttggtgtttgtcgaggaaaggtttct
gaaggaattgatttctctgatgataatgccagagcagttatcattgttggtatcccattt
ccaaacatgtatgatattcaagttgcactaaagaagaagtataacgacacattcaaatca
tctaaacaactgttaggaggaaatgagtggtactgccaccaagcattccgagctttaaat
caagcagcagggcggtgtatacgacatagacttgattatggagcaatcatcctattggat
gaacgctttcgtgaagaaaggaataaagcatttatttcgaagtggttaagaaaacccttg
agagtgtatgacagttttgaattgtcactggagaaactaaaatcattctttgagaatgcc
aaggagcggtatggcttggatacagtgcatgcaacaacgaatttgaacttaaatgacgat
gatggtgttcaaaacaaggatggaaatatgtggtttccaaagaagaaaaatcagaaactg
aacaagtctagaaatggagctgagaaagagacgtcggttattgaggataaaatctctatt
cccacaccgagtctgagctctcacaatcttggcgaaagtcagccatcagctccaaggaat
agtaacacatacagtttcaaagaccatattaacctccaatgttgtaatctgacggaaagg
ttcactgaggcatcatctgtgacatttacacatgatgaaacccccaccgtcaaggaaagc
ccatcttcacatattgccagtggtgctggcagcgcatattactctaaggatgacaattct
gattgcaccataattgaggatcactcgtcaagttttccagtgtcttcaactactggaagt
aaaatatcaaacacagtcactcccgaaaagagtgtaactgcaaataatattccagaatca
tctttgaattcgagtgttaattctcacaatcagaaaaggagaaagcccacggtcgtacca
tatatagacctcattgaagaagaaaaccatgaagcatcttctgtcagcactccgaaatgg
tacacaaaaagctcagtggaagttagagaggcaacccatgaaactgaatgtagtttggga
agaatttcaaacttgcaatctcctcagttaccaacaagcaatttacctggttcatgttca
ttaaccatccctctactagacaaaaggttactgctattttgttcactctgcaaaaaccca
ttgggacgacatgagaaccatctatctcttacatgctctttgatttcatcatcaattgtt
cacttgagattccttttgaaaaaaagacttgcaacatacaccgctgatgcagaaaagagt
gtaccagttattgttactgattcttcatttgttgatcaacgtgtttgcaatagagtacct
aaaagtacacaggaagaaggtatatggtgtccagaagatgggtgtgttttcagcacaatt
ttttgtcccttctgcagtaataccaacaatttgctcggagttcagatcatggcaaccaat
tcttcaaatgctaagttacttgacaagatattgtttttctttgattctttggaagtgaaa
taccaagaagaagcaggaaaaagtgcttcagaggaagtggatttttcaccaattaccgac
tctggcatggatggagttgcagccttaaattcctttgagaaatattcttatgttccccaa
ccagggaaatcagaagtctggaagtctagaaaatcaaagccaaaactaagagggtcgcct
tatgcagaatgttga
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