Pseudoduganella umbonata: FCL38_04390
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Entry
FCL38_04390 CDS
T06138
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
mum
Pseudoduganella umbonata
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mum03009
]
FCL38_04390 (rimO)
Enzymes [BR:
mum01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
FCL38_04390 (rimO)
Ribosome biogenesis [BR:
mum03009
]
Prokaryotic type
ribosomal protein modification factors
FCL38_04390 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
CLP1_P
Methyltransf_2
Motif
Other DBs
NCBI-ProteinID:
QCP09745
LinkDB
All DBs
Position
1065802..1067193
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AA seq
463 aa
AA seq
DB search
MQSQPLSRLTKPADGSPAPKVGFVSLGCPKALVDSEQILTQLRAEGYDTAKSYAGADLVI
VNTCGFIDAAVQESLDAIGEALAENGKVIVTGCLGAKKDAAGDDLIQKIHPKVLAVTGPH
AVGEVMAQVHTHLPKPHEPFIDLVPPQGVRLTPKHYAYLKISEGCNHRCSFCIIPSMRGD
LVSRPIGELMMEAENLFKAGVKELLVISQDTSAYGIDVKFRSGFWNGRPVKTHMTQLTEA
LGQLAAQYGAWVRLHYVYPYPHVDEIIPMMSGGHVLPYLDIPMQHAHPEVLKRMKRPASG
EKNLERILKWRQMNPDLTIRSTFIAGFPGETEAEFEYLLDFLKEAQIDRLGCFAYSPVEG
ATANEIANPVPEELREERRGRVMLLQEEISRARLKAKVGKTIKVLIDELTPSGAIGRSAA
DAPEIDGVVHVKKPFEPHKKLAVGQFFDVEITRADAHDLWGDA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctcagccactttcccgtcttaccaagcccgccgatggatcgccagcacccaag
gtaggttttgtttcgctcggctgcccgaaggcgctggtcgattccgagcagatcctcacg
cagctgcgcgcggaaggctatgacaccgccaagtcgtacgccggcgccgatctcgtcatc
gtcaacacctgcggcttcatcgatgccgcggtgcaggaatcgctcgatgcgatcggcgag
gcgctggccgagaacggcaaggtcatcgtgaccggctgcctgggcgcgaagaaggatgcc
gccggcgacgacctgatccagaagatccacccgaaggtgctggccgtgaccggtccgcac
gcggtaggcgaggtgatggcgcaggtgcacacgcacctgcccaagccgcacgagccgttc
atcgacctggtgccgccgcagggcgtgaggctgacgccgaagcactatgcctacctgaag
atttccgagggctgcaaccaccgctgctcgttctgcatcatcccgtcgatgcggggcgac
ctggtgtcgcgtccgatcggcgaactgatgatggaagcggaaaacctgttcaaggcgggc
gtcaaggaactgctggtgatctctcaggacacgtcggcctacggcatcgacgtcaagttc
cgctccggcttctggaacggccgcccggtgaagacgcacatgacgcagctgaccgaagca
ctgggccagctggccgcgcagtacggtgcgtgggtgcgcctccattacgtctatccgtac
ccgcacgtggacgagatcatcccgatgatgagcggcggccacgtgctgccttacctcgac
attccgatgcagcacgcccacccggaagtgctgaagcggatgaagcgtccggcctccggc
gagaagaacctggagcgcatcctgaaatggcgccagatgaatcccgacctgacgatccgt
tcgaccttcatcgccggcttcccgggcgagaccgaagcggagttcgagtacctgctggac
ttcctgaaggaagcgcagatcgaccggctgggctgcttcgcctattcgccggtggaaggc
gccaccgccaacgagatcgccaacccggtgccggaagaactgcgcgaggaacgccgcggc
cgcgtgatgctgctgcaggaggaaatctcgcgggcgcgcctgaaggccaaggtcggcaag
accatcaaggtgctcatcgacgagctgaccccgtccggcgcgatcggccgctcggccgcc
gatgcgcccgagatcgacggcgtggtccacgtcaagaagccgttcgagccgcacaagaag
ctggctgtcgggcagttcttcgatgtcgagatcacgcgcgccgatgcgcacgacctgtgg
ggcgatgcgtaa
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