Methanosarcina vacuolata: MSVAZ_2403
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Entry
MSVAZ_2403 CDS
T03815
Name
(GenBank) DNA-directed RNA polymerase subunit B''
KO
K03045
DNA-directed RNA polymerase subunit B" [EC:
2.7.7.6
]
Organism
mvc
Methanosarcina vacuolata
Pathway
mvc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mvc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSVAZ_2403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mvc03021
]
MSVAZ_2403
Enzymes [BR:
mvc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSVAZ_2403
Transcription machinery [BR:
mvc03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
MSVAZ_2403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
Motif
Other DBs
NCBI-ProteinID:
AKB44672
UniProt:
A0A0E3Q782
LinkDB
All DBs
Position
complement(3084688..3086283)
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AA seq
531 aa
AA seq
DB search
MQHHIDSFNKFIDYGLQKIIDEQRTIETDIEDTYLKLGKIRVEHPVVKEADGAIEKLYPN
EARLRNLSYSGPLYLEMSVVKEGVESEVMEAKIGQLPIMVKSKICNLPGLSETEKVRYGE
DPLDPGGYFIIGGTERVVMTLEDLAPNKILVEYGERYGDMIEVAKVFSQKRGYRALVIVE
RGRKSLLEVSFPSISGRVFFITLMRALGIVTDEDIVNAVSSDPEIIKFMLENLEEAEVET
QEEAIEKIGARVAAGQAKEYQIKRANYVIDRYLFPHLGNDMRDRISKAHFLARMAESCFE
LALGKRSEDDKDHYANKRLKLAGDLMEDLFRVSFNRLARDIKYQLERANMRNRELNVATI
VRADVLTDRLQHPLATGNWVGGRTGVSQLLDRNDYISTLSHLRRVISPLSRAQPHFEARD
LHATQWGRLCPSETPEGPNCGLVKNFAEMVELSTGIENIDGIKKILHDLNVERVVVKVPE
IPAKIKETILDEFGEEVVEEYEEPSESESKFKDDEFYDYSDMDDAGSMFGD
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcaccatatagactcgtttaacaagtttatagattacgggctgcaaaaaatcata
gatgaacagagaacaatagaaaccgatatcgaggatacctacctcaaacttggaaaaatc
cgggtagaacatcctgtggtaaaggaagccgacggggcaatcgaaaaactctatcccaac
gaggcaaggctcaggaacctttcatactcaggtcctctctacctcgaaatgagcgtggta
aaagaaggagttgagtctgaagtaatggaagcaaaaatagggcagcttcctatcatggtc
aaatccaagatatgtaaccttccagggcttagcgaaaccgaaaaagtacggtatggagaa
gacccgcttgaccctgggggatatttcattatcggtggtaccgaaagggtggttatgacc
cttgaagacctcgcccctaacaaaattcttgtagagtatggcgagagatacggcgatatg
atagaggtcgcaaaggtcttctcacaaaaacgcggatacagggctctcgtaatcgtagaa
agaggacgaaagtccctgcttgaggtttctttcccttctatttcaggcagagttttcttc
attacgctgatgagagctcttgggattgtaactgacgaagatattgtaaatgcagtttca
agcgatcctgaaattatcaagttcatgctggaaaaccttgaagaagccgaagtcgagacc
caggaagaagcaatcgagaaaatcggggcccgggtcgctgcaggtcaggccaaggaatac
cagataaaaagagcaaactacgttattgacaggtatctgttccctcatcttggaaacgac
atgagagacaggatctccaaggctcacttccttgcaagaatggctgagtcctgttttgag
ctggcccttggcaagcgttcggaagatgataaagaccactatgcaaataaaaggctaaaa
ctcgcaggagacctgatggaagatctcttcagggtatccttcaacaggcttgcaagagat
ataaaataccagctcgagcgcgcaaatatgagaaacagggagttgaacgtcgcaacaata
gtcagggccgatgtgttgactgatcgcctgcagcaccctctggcaaccggaaactgggtt
ggaggacgaacaggtgtgtctcagctccttgatagaaacgactatatctccacgctttcc
catctgcgccgggtaatttcgcccctttcacgagcccagcctcactttgaggcccgagac
ctgcatgcaacccagtgggggaggctctgcccttcggaaactcctgaaggcccgaactgt
ggcctggtgaaaaactttgccgagatggttgaactttcaacaggtatcgaaaatatcgac
gggataaaaaaaatccttcatgacctgaatgtcgagcgcgtggttgtaaaggtacctgaa
atcccggccaaaataaaagaaaccatacttgatgagttcggagaagaggttgttgaagaa
tatgaagagccttcggaaagcgaaagcaaattcaaagatgatgagttttacgattattca
gatatggacgatgccggatcaatgttcggtgattga
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