Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112401872
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Entry
112401872 CDS
T08872
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03020
RNA polymerase
nasi03420
Nucleotide excision repair
nasi05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112401872 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
112401872 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
112401872 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nasi03021
]
112401872 (POLR2A)
03400 DNA repair and recombination proteins [BR:
nasi03400
]
112401872 (POLR2A)
Enzymes [BR:
nasi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112401872 (POLR2A)
Transcription machinery [BR:
nasi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112401872 (POLR2A)
DNA repair and recombination proteins [BR:
nasi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112401872 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
112401872
NCBI-ProteinID:
XP_024604166
UniProt:
A0A341BNA4
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDVVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggcggc
atcaaatacccagagaccaccgagggaggccgccccaagcttggggggctgatggatccg
aggcagggggtgattgagaggactggccgctgccaaacctgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaaacctgtgttccatgtcggcttcctg
gtcaagacaatgaaagttttgcgctgcgtctgcttcttctgctccaaattgcttgtggac
tctaacaacccaaagatcaaggacattttggctaagtccaaggggcagcccaagaagcgg
ctcacacatgtctatgacctctgcaagggcaaaaacatctgcgagggcggggaggagatg
gacaacaagttcggtgtggagcagcctgagggtgatgaggatttgaccaaagaaaagggc
cacggcggctgtgggcggtaccagccccggatccggcgctccggcctggagctgtacgca
gagtggaagcacgtcaacgaggactctcaggagaagaagatcctgctgagtcctgagcgg
gtgcacgagatcttcaaacgcatctcagatgaggagtgcttcgtcctgggcatggagcct
cgctacgcccggcccgagtggatgattgtcactgtgctgcccgtgcccccgctctccgtg
cggcctgctgttgtgatgcagggctctgcccgcaaccaggatgacctgacacacaaactg
gccgacatcgtgaagatcaacaatcagcttcggcgcaatgagcagaacggcgcggccgca
cacgtcatcgctgaggacgtgaagctcctccagttccacgtggccaccatggtggacaat
gagctgcctggcttgcctcgtgccatgcagaagtctgggcgtcccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgcgtgcgcgggaacctgatgggcaagcgggtggac
ttctcggcccgcactgtcatcacccccgaccccaacctctccattgaccaggttggcgtg
cctcgctccattgccgccaatatgacctttgcggagatcgtcacccccttcaacattgac
agacttcaggaactagtgcgcagggggaacagccagtacccaggggccaagtacatcatc
cgggacaacggtgatcgcattgacctgcgtttccaccccaaacccagtgaccttcacctg
cagactggctataaggtggaacggcacatgtgcgatggggacattgttatcttcaaccgg
cagccaactttgcacaaaatgtccatgatgggacatcgggttcgcatcctgccctggtct
acttttcgcttgaatcttagtgtgacaactccatacaatgccgattttgatggggatgag
atgaacttgcacctgccacagtccctggagacgcgggctgagatccaggagctcgccatg
gtgccacgcatgatcgtcaccccccagagcaatcgcccagttatgggcattgtgcaggac
acgctgaccgcagtgcgcaaattcaccaagagggacgttttcctggagcggggggaggtg
atgaacctcctgatgttcctgtccacgtgggacggcaaggtcccacagccagccatcctg
aagccccggcccctgtggacagggaagcagatcttctccctcatcatacccggccacatc
aactgtatccgtacccacagcacccatcccgatgatgaggacagtggcccttacaagcac
atctctcctggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctttgggcacatcagctggctccctggtccacatctcttacctagagatg
ggtcatgacatcacccgcctcttctactccaacattcagactgtcattaataactggctc
ctcattgagggtcataccattggcattggggactccattgctgattctaagacttaccaa
gacattcagaacactattaagaaggccaagcaggatgtaatagaggtcatcgagaaggcg
cataacaacgagctggagcccaccccggggaacactctgcggcagacctttgagaaccag
gtgaaccgcattctcaacgacgcccgagacaagactggctcctctgcccagaaatccctg
tctgagtacaacaactttaagtcaatggtggtgtccggggctaaaggttccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaacgtggagggcaagcggatcccgttt
gggttcaagcaccggactctgcctcacttcatcaaagatgactatgggcctgagagccgt
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgtgaggggctcatcgacacagctgtcaagactgctgagactggatacatc
cagcggcggctgatcaaatccatggagtcggtgatggtgaagtatgacgccaccgtgcgg
aactccatcaatcaggtggtacagctgcgctatggtgaagacggcctggcgggcgagagc
gttgagttccagaacctggctaccctcaagccttccaacaaggctttcgagaagaagttc
cgctttgattataccaatgagagggccctgcggcgcaccctgcaggaggatgtggtgaag
gacgtgctgagcaacgcacacattcagaatgagctggagcgagaatttgagcggatgcgt
gaggacagggaggtgctcagggtcatcttcccaactggtgacagcaaggttgtcctcccc
tgtaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctt
ccctctgacctgcaccccatcaaggtggtagagggtgtcaaggagctgagcaagaagctg
gtgattgtgaatggggacgacccactgagccggcaggcccaggagaacgccaccctgctc
ttcaacatccacctgcggtccacgctgtgctcccgccgcatggccgaggagtttcggctc
agcggagaggccttcgactggctgctcggagagatcgagtccaagttcaaccaagccatt
gcccatcctggggaaatggtgggagctctggctgcacagtcccttggagaacctgccacc
cagatgactctgaacaccttccactatgctggtgtgtccgccaagaatgtgacactgggt
gtgccccgacttaaggagctcatcaacatttccaagaagccaaagaccccctcacttact
gtcttcctgctgggccagtctgctcgagatgctgagagagccaaggatattctgtgccgc
ctggaacatacaacgctgaggaaggtgacggccaacacggccatctactatgaccccaac
ccccagagcacggtggtggcagaggatcaggagtgggtgaacgtctactatgagatgcct
gactttgatgtggcccgaatctccccctggcttttgcgggtggagctggaccggaagcac
atgactgatcggaagctgaccatggagcagattgccgagaagatcaatgctggtttcggt
gatgacttgaactgcatctttaacgatgataatgcagagaagctggtgctccgtatccgc
atcatgaacagcgatgaaaacaagatgcaagaggaagaagaggtggtggacaagatggat
gacgacgtcttcctgcgctgcatcgagtccaacatgctgacagatatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacttgccgcagacggacaacaagaagaagatc
atcatcacagaggacggggagttcaaggccttgcaggagtggatcctggagacggatggc
gtgagcctcatgcgggtgctgagcgagaaggacgtggaccctgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatagaagccgtgcggaaggccctggagcgg
gagctgtaccacgtcatctccttcgatggttcctacgtcaattaccggcacttggctctc
ctgtgtgataccatgacctgtcgtggccacttgatggccatcacccgacacggagtcaac
cgccaggataccggacctctcatgaagtgctcctttgaggaaacggtggatgtgcttatg
gaagcagctgcacatggagagagcgaccccatgaagggggtgtctgagaacatcatgctg
ggccagctggctccggccggcactggctgctttgacctcctgctcgatgcagagaagtgc
aagtatggcatggagatccccaccaacatccccggcttgggggctgccggacccaccggc
atgttcttcggctcggcccccagtcccatgggaggaatttctccagccatgacaccctgg
aaccagggcgcaaccccagcctatggcgcctggtcccccagtgttgggagcgggatgacc
ccgggggcagcaggcttctctcccagtgctgcttcggatgccagtggcttcagccctggt
tactccccggcctggtcccccacgccgggttccccgggctcccctggcccctcaagtccg
tatattccctcaccagggggtgccatgtctcccagctactccccgacgtcgcctgcctac
gagccccgctcccctgggggctacacgccccagagtccctcttactcccccacttcaccc
tcctactcccctacgtctccatcctattctccaaccagccccaactacagccccacgtca
cccagctactccccgacctcacccagctactccccgacctcacccagctactccccgacc
tcgcccagctactccccgacctcgcccagctactccccgacctcacccagctactcgccc
acttccccaagctactcgcccacatcacccagctactcgccaacctctcccagctattcg
cccacctctcccagttactcgccaacttcacccagctactctcccacctcacctagctac
tctccgacatctccaagctattcgccgacatcaccaagctactcaccaacttccccaagt
tactcgcccaccagccctaactattctccaaccagtcccaattacaccccgacgtcaccc
agctatagcccaacatcccccagctactcacctactagtcccaactacacaccaacgagc
cccaactacagcccaacctctccaagctactctccgacctcacccagctactccccgacc
tcaccaagctactccccttcgagcccacgatacacaccacagtctcccacctatacccca
agctcacccagctacagccccagctcgcccagctacagcccgacttcaccgaagtacacc
ccaaccagtccttcctacagccccagctcaccggagtacaccccgacctctcccaagtac
tcacctaccagcccgaaatattcgcccacctcccccaagtactctccgaccagccccacc
tactcgcccaccactccaaaatactcgccgacgtctcctacttactcaccaacctctccg
gtctacaccccaacctcccccaagtactcacctaccagccccacctactcgcccacctcc
cccaagtactcacccaccagccccacctactcgcccacttcccccaaaggctcgacctac
tcgcccacctcccctggctactcgcccaccagccccacctatagcctcaccagcccagcc
atcagtcccgatgacagtgatgaggagaactga
DBGET
integrated database retrieval system
