Candidatus Nitrosopelagicus brevis: T478_0402
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Entry
T478_0402 CDS
T03537
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit, N-terminal domain protein
KO
K03047
DNA-directed RNA polymerase subunit D [EC:
2.7.7.6
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T478_0402 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbv03021
]
T478_0402 (rpoA)
Enzymes [BR:
nbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T478_0402 (rpoA)
Transcription machinery [BR:
nbv03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
T478_0402 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
AJA92418
UniProt:
A0A0A7V0K7
LinkDB
All DBs
Position
complement(331718..332320)
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AA seq
200 aa
AA seq
DB search
MSLEIINENEEKVSVKIKGVPLQYANALRRICLNGVPIYAVESVDMLENSSVLADEGVAH
RVGLIPLKTDLESSKADNENDKIMLTLDSGISDETRTILSGDLKSQDSNVVPTSDDIPIV
TLAPGQSIKFEAHARLGKGTEHAKWNSANIVTLTESDKDDERILTVESTGALNPKHIILS
SVEQLASKLSEFKTTISEIK
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
ttgtctctagaaattattaatgaaaatgaagaaaaagtatctgtaaagatcaaaggagtg
ccacttcaatatgccaatgcattaagaagaatttgtctaaatggagttccaatttatgct
gttgaaagtgttgatatgttagaaaattcatcggtattagcagatgaaggtgtagctcat
agagttggtttaattcctttgaaaacagacttggaatcatctaaggcagataatgaaaat
gacaaaattatgcttacattagattcaggaatttcagatgagacaagaactattctttct
ggagatttaaagtctcaagatagtaatgtagttcctacatcagatgatatacctatagtt
acacttgcaccaggtcaatcaataaaattcgaagcacatgcaagattaggtaaaggaact
gagcatgcaaaatggaattcagcaaatattgtcacactaacagaatctgacaaagatgat
gaaagaattctaacagttgaatctacaggtgcgttgaatccaaaacacatcattttatca
agtgtagaacaattagcaagtaaattatccgagtttaagaccacaatatcggaaattaag
taa
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