Sciurus carolinensis (gray squirrel): 124968506
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Entry
124968506 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 11 subunit alpha-like
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncar04040
]
124968506
Ion channels [BR:
ncar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
124968506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
124968506
NCBI-ProteinID:
XP_047386985
EnsemblRapid:
ENSSCRG00010021715
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All DBs
Position
17:30489196..30604658
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AA seq
1770 aa
AA seq
DB search
MDDRCYPVIFPDERNFRPFTPDSLAAIEKRIAVQKEKKKSKDKTVTEPELRPQLDLKASR
KVPKLYGSIPRDLVAKPLEDLDPYYRNHKTFMVLNKKRTIYRFSAKRALFILGPFNPIRS
LAIRILVHSLFSMFIICTVIVNCVLMAAVQVKENNSNETDTTEYIFTTIYILEAVIKILA
RGFILDEFSFLRDPWNWLDSIVIGTAIASYFPNKKINLLSLRTFRVFRALKAISVVSGLK
VIVGALLRSVKKLVDVMVLTLFCLSIFALVGQQLFMGNLNQRCIRKNCTKDFHTNEYCFE
KEDNSKEPILCGSWLGSRSCPNNSTCNHTRINPDNGYTNFDNFGWSFLAMFRLMTQDSWE
KLYRQTLRTSGLYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNRNVAAETEAKEKMFQ
EAQQLLKEEKEALVAMGIDRSSLNSLQASSFSPKKRKFFGNKKRKSFFKGKSRKDKASGS
DSDGESPPNPPLLEKTKQLSQNLPVDLFDEHGDPFQRQRALSAVSILTITVHEQEKSQEP
CLPCGENLASRYLVWNCSPQWLCIKKTLRFVMTDPFTELAITICIIINTIFLAMEHNNMD
KYLRTILQTGNWVFSGIFIAEMCLKIIALDPYHYFRQGWNIFDSIVAVLSFAEIIYSKWS
FLRSFRVLRVFKLAKSWPTLNTLIKIIGHSVGALGHLTVVLAIVIFIFSVVGMQLFGSKF
GCRKSQHLCSGDLCFRRWHMGDFYHSFLVVFRILCGEWIENMWACMQEVDGPLCIIVFVL
ILIIGKLVVLNLFIALLLNSFSNEERYGISEGDARKTKVQLALDRFRRAFSFVIHTLQHF
CCKRCKRQNLPKLEEMTADSDAESKDIIPLTTDMKRKSEAREEFGVLNSAQKALSIGHDG
TWLAPLAEEEDDDEDPDANNVPSITQSEAERQAYDLRQGTKKPASPGDQSVEIDVFPEDE
AYLSIQNPRKKSDATSIQSECSTIDLQDVFGPLNRMVPLKKKPERCLPKGLRCFFPCCSK
DRRNSPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGTLVFEDVHLNERPHIQEILNY
TDHAFTYIFILEMCLKWVAFGFGKYFTSAWCWLDFIIVIVSVVSLFTLKMWKPLRTLRAL
RPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVNFFSGHFGRCISGKD
KNNYLDFINNKSQCNETYRWVNLEVNFDNVGIAYLALLQVATYKGWLDIMNAAVDSKGVE
KQPAFEANPYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKISGQDIFMTEEQKKYY
SAMKKLGTKKPQKPIPRPLNKCQGLVFDLVTSQVFDIFIMSLIILNMVSMMAESHEQSKE
ATFILENLNIAFVVIFTIECLIKIFALRQYYFTNGWNLFDCVVVVLSIISTMVSALENQK
HIXFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAI
LGMKCFSEVKKESGIDDIFNFETFEGSMLCLFQITTSAGWDSLLNPMLNSGDSHNSSANS
HLPTVATAYFVSYIIISFLIVVNMYIAVILENFNTATEESEEPLGEDDFEIFYEVWEKFD
PEATQFIEYSALSDFADALPEPLRVAKPNKFQFLVMDLPMVSGDRLHCMDILFAFTTRVL
GDSSGLDTMKAMMEEKFMEANPFKKLYEPIVTTTKRKEEERGAAVIQKAFRRYIRRMTCA
LEDRPPSPFQTLCNGDLSSSEGAKGKVHYD
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggacgacaggtgctacccagtgatcttcccagatgagcggaatttccgccccttcact
cctgactctctggctgccatagagaagcggattgctgtccaaaaagagaaaaagaagtcc
aaagacaagacagtgactgaacctgagcttcgacctcaacttgacctaaaggcctccagg
aaggtgcccaagctctatggcagcattccccgtgacctggtagcgaagcccctggaagac
ttggacccatactacagaaatcacaagacatttatggtgttgaacaagaagagaacaatc
taccgcttcagtgccaagcgtgccttgttcattttgggacctttcaatccaatcagaagt
ttagccattagaatcctggtccattcgttgttcagcatgttcattatctgcacggtcatt
gtcaactgtgtgcttatggctgcggttcaagttaaggagaacaatagtaacgagacagac
actactgaatacatcttcactacgatttatattttggaagccgtgataaaaatattggca
agaggttttatcctggatgagttctctttccttcgagatccatggaactggctggactcc
attgtcattggaacagcgattgcatcttattttccaaataaaaaaatcaatctgttgtcc
ctgcgtaccttccgagtgttcagagctttgaaggcaatttcagtagtttcaggtctgaag
gttattgtgggggccttactgcgctctgtgaagaagcttgttgatgtgatggtcctcacc
ctcttctgcctcagcatcttcgccctggtaggtcagcagctcttcatgggaaatctgaac
cagagatgtatcaggaagaactgtacgaaagactttcacactaatgaatattgctttgaa
aaggaagataattccaaagaacccatattgtgtggcagctggcttggcagcagatcctgt
cccaacaattctacgtgcaaccacaccagaattaatcctgacaacggttacacgaatttt
gacaactttggctggtcttttcttgccatgttccggcttatgactcaagattcctgggag
aagctttatcgacagactctgcgcacctctgggctctactcagtcttcttcttcgtggtg
gtcatcttcctgggttctttctacctgattaacttaaccctggctgttgtcaccatggct
tatgaggagcagaacaggaatgtggctgcagagacagaggccaaggaaaagatgtttcag
gaagcccagcagttgttaaaggaggagaaagaggctctggttgccatgggaattgacaga
agttcacttaattcccttcaagcctcatctttttccccaaagaaaagaaagttctttgga
aataagaaaaggaagtccttctttaagggaaagtctaggaaagacaaagcttcaggatca
gattctgatggagagtcccccccaaatccgcctcttctagagaaaaccaaacaactgtcc
cagaacctgccagtggacctgtttgatgagcatggagatcccttccaaagacaaagggca
ctaagtgctgttagcatcctcaccatcactgtgcatgaacaagaaaaatcacaggaacct
tgtctcccatgtggggaaaacctggcatccagatacctcgtgtggaactgcagtccccag
tggctgtgcattaagaagaccctgagatttgtgatgaccgatccttttactgaactggct
atcaccatctgcatcataatcaataccatcttcttggccatggagcataacaatatggac
aagtatttgaggaccatattacaaacagggaattgggttttcagtggcatttttatagca
gaaatgtgcctaaaaatcattgcacttgatccttaccactactttcgccaaggctggaac
atttttgacagcatcgtagctgttctgagttttgcagaaatcatatattcaaagtggtcc
ttcttgcgttccttcagagtgctgagggtcttcaagttagccaaatcctggccaacttta
aatacactaattaagataatcggccactctgttggagctcttggacacctgactgtggtc
ctggccattgtgatctttattttttctgtagttggcatgcagctttttggctctaaattc
ggttgccgaaagagtcaacacctctgttctggagacttgtgttttcggcgctggcacatg
ggggatttttaccactccttcctggtggtattccgcatcctctgtggggaatggatcgaa
aacatgtgggcgtgtatgcaagaagttgacggaccgctgtgcattattgtctttgtcttg
atcttgataataggaaaactcgtggtgctcaacctcttcattgctttattgctcaattcc
ttcagcaatgaagagagatatggaatctcagaaggagatgctaggaaaactaaagtgcag
ttagccctggatcggttccgccgggctttttcttttgtgatacacactctccagcatttc
tgttgcaagcgatgcaagaggcagaacttaccaaagctagaagagatgacagcagactct
gatgcagagagcaaggatattattcctctgaccacagatatgaaaaggaaatcagaagcc
cgggaggaatttggagtactaaactctgcacaaaaggcattaagcattgggcacgatggg
acttggctggccccacttgcagaggaagaagatgatgatgaagatccggatgcaaataat
gtaccatccatcacacaatctgaggctgaaagacaggcctatgaccttcgccaagggacc
aagaaacctgccagcccaggagatcaaagtgtggaaattgatgtgtttcctgaggatgag
gcttatttgtccatacagaatccaagaaagaagtctgatgctaccagtattcaatcagaa
tgtagcactatagatctgcaggatgtctttggacctttaaatagaatggtccccctaaaa
aaaaaaccagagagatgtttgcccaaaggtctgcgttgcttctttccctgctgtagcaag
gacaggagaaattctccctgggtcatttggtggaaccttcggaaaacctgctaccaaata
gtgaaacacagctggtttgagagctttattatctttgtgattctgctgagcagtgggaca
ctggtattcgaagatgttcatcttaatgagcggccccatatccaagaaatactaaattat
actgaccatgctttcacatatattttcatcttggagatgtgtttgaaatgggtggccttt
ggatttgggaagtatttcaccagtgcctggtgctggctcgatttcatcattgtgattgtc
tccgtggtcagtctcttcaccttaaagatgtggaagcccctccggactctgcgagcactg
aggcctcttcgagcactgtctcagtttgaaggaatgaaggtggtggttaatgctcttata
ggggccattcctgccattctcaatgttttgcttgtttgcctaattttctggctcatattt
tgtatcctgggagtaaacttcttttctggacattttggaagatgcattagtggaaaagat
aaaaacaattatctagattttataaataacaaaagccagtgtaatgagacttaccgctgg
gtcaacctggaagtcaactttgacaacgtggggatcgcttaccttgctctcctgcaagtg
gcaacatataaaggctggctggacatcatgaatgcagctgttgattcaaaaggggtagaa
aaacagccagcttttgaggcaaatccatacatgtacctttacttcgtagtttttatcatc
tttgggtcattcttcactctgaatctctttattggtgttattattgacaacttcaaccaa
cagcagaaaaagataagtggacaagacatttttatgacagaagaacagaagaaatactac
agtgcaatgaaaaaattaggaaccaaaaaacctcaaaaacccattccaaggcctctgaac
aaatgtcaaggtcttgtgtttgacctggtcacaagccaagtctttgacatcttcatcatg
agtctcattatcctaaacatggttagcatgatggctgaatcacatgaacaatccaaagaa
gcgacatttatccttgagaatctcaacatagcctttgtggtcatctttacgatagaatgt
ctcatcaaaatctttgctttgaggcaatactacttcaccaatggctggaacttatttgat
tgtgtggtcgtggttctttctattattagtacaatggtctctgccttggaaaatcagaag
cacattncttttcctccaactctcttcagaatcgtccgcctggctcggattgggcgcatc
ctgagacttgttcgggcagcgagaggaattaggacgctcctttttgctctgatgatgtcc
cttccctctctgttcaacatcggtcttctgctctttttggttatgtttatttatgccatt
ttaggcatgaaatgtttttctgaagtgaagaaagagtctggaatcgatgacatattcaac
ttcgaaacttttgagggcagcatgctctgtctctttcagataaccacgtcggcaggctgg
gactctctcctcaaccccatgctgaattcaggagactcgcacaactcctcagccaacagt
cacctccccaccgtagccacagcctacttcgtcagttacatcatcatctccttcctcatc
gtcgtcaacatgtatattgctgtgatcttagagaacttcaatacagccaccgaagagagt
gaggaacctctgggtgaagatgattttgaaatattctatgaagtctgggaaaagttcgat
cccgaagcaacacagtttattgaatactctgccctttccgactttgccgatgccctgcct
gagcctctgcgtgtggcaaagccaaataaattccagttcctagtaatggacttgcccatg
gtgagtggggatcgcctgcactgtatggatattctctttgccttcaccactagggtactt
ggtgactctagtggcctggataccatgaaagcaatgatggaggaaaagttcatggaagcc
aatcccttcaagaagttatatgaacccatagtcaccaccaccaagagaaaggaagaggaa
agaggtgctgctgttattcagaaggcctttcgaaggtacataaggaggatgacgtgtgct
ttggaagacaggcctccttcgccattccagacactttgcaatggagacttgtctagctcg
gagggggccaagggcaaagtgcactatgactga
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integrated database retrieval system
