Sciurus carolinensis (gray squirrel): 124970247
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Entry
124970247 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04010
MAPK signaling pathway
ncar04020
Calcium signaling pathway
ncar04713
Circadian entrainment
ncar04925
Aldosterone synthesis and secretion
ncar04927
Cortisol synthesis and secretion
ncar04929
GnRH secretion
ncar04934
Cushing syndrome
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
124970247
04020 Calcium signaling pathway
124970247
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
124970247
04925 Aldosterone synthesis and secretion
124970247
04927 Cortisol synthesis and secretion
124970247
09159 Environmental adaptation
04713 Circadian entrainment
124970247
09160 Human Diseases
09167 Endocrine and metabolic disease
04934 Cushing syndrome
124970247
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ncar04040
]
124970247
Ion channels [BR:
ncar04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
124970247
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
124970247
NCBI-ProteinID:
XP_047389425
LinkDB
All DBs
Position
18:complement(40660355..40712452)
Genome browser
AA seq
2368 aa
AA seq
DB search
MTEGSLAANEVRVPLGASPPSPAAAVGASPESSGAPGREAERGSRPSASPPESPAAERGA
ELGAEEEQPVPYPALAATVFFCLGQTTRPRSWCLRLVCNPWFEHVSMLVIMLNCVTLGMF
RPCEDLECRSERCSILEAFDDFIFAFFAVEMVIKMVALGLFGQKCYLGDTWNRLDFFIVM
AGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFV
FFIFGIVGVQLWAGLLRNRCFLDSAFVRNNNLTFLRPYYQTEEGEENPFICSSRRDNGMQ
KCSHIPSRRELRVQCTLGWEAYAQPQATGAGHNACINWNQYYNVCRSGDLNPHNGAINFD
NIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQF
SETKQRENQLMREQRARYLSNDSTLASFSEPGSCYEELLKYVGHVFRKVKRRGLRLYARW
QSRWRKKVDPSGSLQGTGPGRRQRRAGRGAASVHHLVYHHHHHHHHHYHFSHGSPRRPGA
EPGARDNRLVPTGVPPSPPSPGHRPPDAESVHSIYHAGCHVEGPQERARVARAAATAAAS
LKLASGLGTMNYPTILPSGLVGSKGSISPGPKGKRAGHPRATGXQPPRAWAGPGPYEKIQ
HVVGEHGLGRASSRLSGLSVPCPLPSPQAGTLTCELKNCPYCAGALEDPELELSGSESGD
SDTHGVYEFTQDVQRSDRRDPMRPPPAADTAGQGGMECRPQQRAAPGGSSCLGRLWASFS
GKLRRIVESKYFNRGIMVAILVNTLSMGVEYHEQPEELTNALEISNIVFTSMFALEMLLK
LLACGPLGYIRNPYNIFDGIIVVISVWEIVGQADGGLSVLRTFRLLRVLKLVRFLPALRR
QLVVLVKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWA
IVTVFQILTQEDWNVVLYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGD
ANRSDSDEDKTSARFEEDLDKFRVLRATEMKMSSLAVTPNGHLEGRGSLPPPLIMHTAAT
PMPTPKSSPHLDVAHGLLDSRRGSSSSVDPQQGDQKSLASLRSSPCAHWGPGSAWSSRRS
SWSSLGRAPSLKHRGQRGERESLLSGDGKGSTDDEAEDGRPGAGSRPRASPGPRASPLRR
AESLDHHSTLDPRPAALLPAKFHDCNGQTVALPSEFFLRIDSHKEDMAELDDDMEDVTAG
FRLHKVLEPYTPRWCRRRGSWALYLFSPQNRLRAYCQKVIAHRMFDHVVLVFIFLNCITI
ALERPDIDPGSTERAFLSVSNYIFTAIFVAEMMVKVVALGLLWGEHAYLQSSWNVLDGLL
VLVSLVDIVVAMASAGGAKILGILRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIG
NIVLICCAFFIVFGILGVQLFKGKFYYCEGADTRNISTKAECRAAHYRWVRRKYNFDNLG
QALMSLFVLSSKDGWVNIMYDGLDAVGIDQQPVQNHNPWMLLYFISFLLIVSFFVLNMFV
GVVVENFHKCRQHQEAEEARRREEKRQRRLERRRRSTFPSPEAQRRPYYADYSQARRSVH
SLCTSHYLDLFITFVIGLNVITMSMEHYDQPKSLDEALKYCNYVFTIVFVIEAVLKLVAF
GLRRFFKDRWNQLDLAIVLLSIMGIALEEIEMNAALPINPTIIRIMRVLRIARVLKLLKM
ATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGRLECTEDNPCEGLSRHATF
ANFGMAFLTLFRVSTGDNWNGIMKDTLRECAREDKHCLGYLPALSPLYFVTFVLVAQFVL
VNVVVAVLMKHLEESNQEAREDAQLDAELDAELDAELQLQVAPGPPARPSPPDGPGLRAA
RKVSVSRALSLPSDSCMFRPVAPAVAPHPHPLPEAGVEPRVGSTSSGLAASAHSPPLEPR
ASPQVLPAVSPPARGSDPRCALSPRGAPRSPSLSRLLCRQEALHRESLEEQADGPGDSAP
GSTESVEKAPARRASLGGSPRSPPCSPQPASIRTRKHTSGQRCTSGRPPAPGGDEAEASD
PADEEVSHITSSAQPWPLASTHSLAASPVTSPVARGAAGSGQDLHRFCSVDAQGFLDKPG
RVDVQRWPSMELGSGDSHLEPGEAKAWVPELEPALGARRKKKMSPPCISVDPPVEDESSA
RPPAAEGGSSTLRRRTPSCEATLHRDCLESAEGPTAGGDAAAKAERRGPACWAEHLTVPN
FAFEPLDVGGPGGDPVLDSGHSGTPEPRASSSGAIATLDPHETEASLPSGDTPEKDPGLF
LTVPQXPLKKLGSLPATPAPGNSADRPM
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagggctcgctggccgccaacgaggtccgggtgcccctgggcgcgtcgcccccg
agccctgcagcggcggtgggggcgtctccggagagctctggggcgccagggcgcgaggcg
gagcgggggtccaggcctagcgcctcgccccccgagagcccggcagcagagcggggcgcg
gagctgggcgccgaggaagagcagcctgtcccgtacccggcgctggcggcgacggtcttc
ttctgcctcgggcagaccacgcggccgcgcagctggtgcctccgactggtctgtaaccca
tggttcgagcacgtcagcatgctggtcatcatgctcaactgtgtgaccctgggcatgttc
cggccctgcgaggacctcgagtgccgctcggagcgctgcagcatcctggaggcctttgac
gacttcatcttcgccttcttcgcggtggagatggtcatcaagatggtggccctggggctg
tttgggcagaagtgctacctgggggacacctggaaccggctggacttcttcatcgtcatg
gcgggcatgatggagtactccctggacggacacaacgtcagcctctctgcaatccgcacc
gtgcgcgtgctgcggcccctccgcgccatcaaccgcgtgcccagcatgaggatcctggtc
accctgctgctggacacgctgcccatgctggggaatgtcctgctgctctgcttcttcgtc
ttcttcatctttggcattgttggtgtccagctctgggccggcctgctgcggaaccgctgc
ttcctggatagtgcgtttgtcaggaacaacaacctgaccttcctgcgtccatactaccag
acggaagagggcgaggagaacccgttcatctgctcctcgcgccgggacaacggcatgcag
aagtgctcgcacatccccagccgccgggagctgcgcgtgcagtgcacgctgggctgggag
gcctacgcgcagccccaggccacgggcgctggccacaacgcctgcatcaactggaaccag
tactacaacgtgtgccgctccggggacctcaacccccacaacggcgccatcaacttcgac
aacattggctacgcctggatcgccatcttccaggtgatcacgctggagggctgggtggac
atcatgtactacgtcatggacgcccactccttctacaacttcatctacttcatcctgctc
atcatcgtgggctccttcttcatgatcaacctgtgcctggtggtgatcgccacgcagttc
tcggagaccaagcagcgggagaaccagctgatgcgggagcagcgtgcccgctacctgtcc
aacgacagcacgctggccagcttctcggagcccggcagctgctacgaggagctgctcaag
tacgtgggccacgtcttccgcaaggtcaagcgccgcggccttcgtctctacgcccgctgg
cagagccgctggcgcaagaaggtggaccccagcggcagcctgcagggcacgggacccggg
cgtcggcagcgccgggcgggcaggggcgcggcctccgtgcaccacctggtgtaccaccac
caccaccaccaccaccaccactaccacttcagccatggcagccctcgcaggcccggggcc
gagccaggcgcccgcgacaacaggctggtcccgaccggtgtgccaccctcgccgccgtcc
ccgggccacaggccgcccgacgccgaatctgtgcacagcatctaccacgccggctgccac
gtggaggggcctcaggagagggcccgggtggcacgtgctgcagccaccgctgccgccagc
ctcaagctggcctcagggctgggcaccatgaactaccccaccatcctgccttcgggtctg
gttggcagcaagggcagcattagccccgggcccaagggcaagcgggccgggcacccgaga
gccacagggncacagcccccccgagcctgggcgggccccggcccctacgagaagatccag
cacgtggtcggggagcacggactgggccgggcctccagccgcctgtcgggcctgagcgtg
ccctgccctctgcccagcccccaggcgggcacgctcacctgtgagctgaagaactgccca
tactgtgccggcgccctggaggaccccgagctggagctcagcggctccgagagcggagac
tcggacacccacggggtctacgagttcacgcaggacgtgcagcgcagcgatcgccgggac
cccatgcggccaccccccgccgccgacacagcaggccagggtggcatggagtgccggcca
cagcagcgggcagccccgggcgggtcaagctgcctgggccgcctctgggcttccttcagc
ggcaagctgcgccgcatcgtggagagcaagtacttcaaccggggcatcatggtggccatc
ctggtcaacacgctgagcatgggcgttgagtaccatgagcagccggaggagctgaccaat
gcgctggagatcagcaacatcgtcttcaccagcatgtttgccctggagatgctgctgaag
ctgctggcctgtggccccctgggctacatccggaacccctacaacatctttgacggcatc
atcgtggtcatcagcgtctgggagatcgtggggcaggcggacggcgggctgtcggtgctg
cgcaccttccggctgctgcgggtgctgaagctggtgcgcttcctgccggcgctgcggcgc
cagctcgtggtgctggtgaagaccatggacaacgtggccaccttctgcatgctgctcatg
ctcttcatcttcatcttcagcatcctgggcatgcacctctttggctgcaagttcagcctg
aagacagacaccggagacactgtccctgaccgaaagaacttcgactccctgctgtgggcc
atcgtcaccgtgttccagatcctgacgcaggaggactggaacgtggtgctgtacaacggc
atggcctccacctcctcctgggccgccctctacttcgtggccctcatgaccttcggcaac
tacgtgctcttcaacctgctggtggccatcctggtggagggcttccaggcagagggtgac
gccaacaggtccgactcggacgaggacaagacgtccgcccgcttcgaggaggatctcgac
aagttcagagtgctgcgagccacagagatgaagatgtcctcgctggcggtgacccccaac
gggcacctggagggccgaggcagcctgcctccgcccctcatcatgcacacggcagccaca
cccatgcccacccccaagagctccccgcacctggatgtggcccatggcctcctggactca
cgtcgagggagcagcagctctgtggacccccagcagggggaccagaagtctctggccagc
ctccgcagctcgccctgcgcccactggggccccggcagcgcctggagcagccggcgctcg
agctggagcagcctgggccgcgcgcccagcctcaagcaccgcggccagcgcggggagcgc
gagtcgctgctgtcgggcgacggtaagggcagcacggacgacgaggctgaggacggcagg
ccaggcgcgggctccaggcccagggcctctcccgggccccgcgccagcccactgcggcgc
gccgagtccctggaccaccacagcacgctggacccgcggcccgctgccctcctgcctgcc
aagttccacgactgtaacgggcagacagtggccctgcccagtgagttcttcctgcgcatc
gacagccacaaggaggacatggccgagctggacgacgatatggaggatgtgactgctggc
ttccgcctacacaaggtgctggagccctacacaccccggtggtgccgccgccgcgggtcc
tgggcgctctatctcttctccccgcagaacaggctgcgcgcctactgccagaaggtcatc
gcgcacaggatgtttgaccacgtggtcctcgtcttcatctttctcaactgcatcaccatt
gccctggagaggccggacatcgaccctggcagcaccgagcgggccttcctgagcgtctcc
aactacatcttcacagccatcttcgtggcggagatgatggtgaaggtggtggccctgggc
ctgctgtggggcgagcatgcctacctgcagagcagctggaacgtgctggacgggctgctg
gtcctagtgtccctggtggacatcgtcgtagccatggcctcagccggtggcgccaagatc
ctgggcatcctgcgggtgctgcgcctgctgcgaaccctgcgacctctgagggtcatcagc
cgggctccgggcctcaagctggtggtggagacgctcatctcgtcgctcaggcccatcggg
aacatcgtgctcatctgctgtgcctttttcattgtcttcggcatcctgggggtacagctc
ttcaaggggaagttctactactgtgagggcgcggacaccaggaacatctccaccaaggcc
gagtgccgcgctgcccactaccgctgggtgcggcgcaagtacaacttcgacaacctgggc
caggcgctgatgtcactgttcgtgctgtcgtccaaggatggctgggtgaacatcatgtac
gacggactggacgccgtgggcattgaccagcagcccgtgcagaaccacaacccctggatg
ctgctgtacttcatctccttcctgctcatcgtcagcttcttcgtgctcaacatgttcgtg
ggcgtggtggtggagaacttccacaagtgccggcagcaccaggaggcggaggaggcccgg
cggcgcgaggagaagcggcagcggcggctggagaggaggcgcaggagcactttccccagc
ccagaggcccagcgccggccctactacgccgactactcacaggcacgccgctctgtccac
tcactctgcaccagccactacctggacctcttcatcaccttcgtcatcggcctcaacgtc
atcaccatgtccatggagcactacgaccagcccaagtcgctggacgaggccctcaagtac
tgcaactacgtgttcaccatcgtcttcgtcatcgaggcggtgctgaagctggtggccttt
ggactccggcggttcttcaaggacaggtggaaccagctggacctggccatcgtcctgctg
tccatcatgggcatcgcgctggaggagattgagatgaatgctgcgctgcccatcaacccc
accatcatccgcatcatgcgtgtgctccgcatcgcccgtgtgctaaagctgctgaagatg
gccacaggcatgcgggccctgctggacactgtggttcaagccctgccccaggtagggaac
cttggccttcttttcatgctcctgttttttatctatgctgccctgggagtggagctgttc
gggaggctagagtgcactgaggacaacccctgcgagggcctgagcaggcacgccaccttc
gccaacttcggcatggccttccttacgctgttccgcgtctccaccggcgacaactggaac
ggcatcatgaaggacacgctgcgggagtgtgcgcgtgaggacaagcactgcctgggctac
ctgccggcgctctcgcccctctacttcgtcaccttcgtgctggtggcccagttcgtgctg
gtcaacgtggtggtggccgtgctcatgaagcacctggaggagagcaaccaggaggcccgc
gaggacgcccagctggacgccgagctggacgccgagctggacgccgagctccagctgcag
gtggcgcccgggccccccgcccggccctcgcccccagacggccccggcctccgggctgca
cgcaaggtgtccgtgtccagggcgctctcgctgcccagcgacagctgcatgttccggccc
gtggcccccgccgtggcgccccaccctcacccactgccggaggctggggtggagccccgt
gtgggcagcacctcctcaggcttggccgcctctgctcactcgccgcccctggagcctcgt
gcctccccgcaggtcctgcccgccgtgtccccccctgccaggggcagcgaccctcggtgt
gccctctccccccgtggggcaccccgctcccccagcctcagtcggctactctgcagacag
gaggccttgcacagagagtcgctggaagagcaggctgatggccctggggacagtgccccg
ggatccacagagtctgttgagaaggccccggccaggcgggcgtccctggggggctcccca
cggtccccaccctgctccccacagcccgccagcatccgcactcgcaagcacacctccgga
cagcgctgcacctccggccggccgccagcccctggtggagacgaggctgaagcctcagac
ccagctgacgaggaggtcagccacatcaccagctctgcccagccctggccgttggcctcg
acccacagccttgcagcctcccctgtcacctcccctgtggcccgaggggcagcaggcagc
gggcaggacctacataggttctgcagtgtggacgctcagggcttcctggacaagccaggc
cgggtggatgtacagaggtggccctccatggagctgggcagtggggacagccacctggag
cccggggaggccaaggcctgggtccctgagcttgagccagccctgggggcacgcaggaag
aagaagatgagccccccctgcatctctgtggacccccccgtggaggacgagagctctgcc
cggccccctgcggcagagggtggcagcagtactctgcggcgcaggaccccgtcctgtgag
gccaccctgcacagggactgcctggagtctgcagagggcccaactgcaggaggggatgct
gcggccaaggcagagcggcggggcccggcctgctgggcagagcacctgactgtgcccaac
ttcgccttcgagccactggatgtggggggccctggcggagaccctgtgctggacagtggc
cacagtgggaccccagaacccagagcttcctcttcaggggccatagcaactctagacccc
catgaaacagaggcttccttgccctctggagacaccccagaaaaggacccgggactgttc
ctcacagttccccaanccccactaaagaaactggggtccctcccggccacccctgcccca
ggcaacagtgcagacagacccatgtag
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